| Protein: | gi|108864175 |
| Organism: | Oryza sativa Japonica Group |
| Length: | 1572 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
No multiple sequence alignment data found for gi|108864175.
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Region A: Residues: [1-136] |
1 11 21 31 41 51
| | | | | |
1 MVAAGDQRRG GVAPEREEGR GKRRGRSTAH PETAKAAETA DGAEEDGGAA RDDEGDGAPA 60
61 VGGRSGAADG VGGNTAKRTE VSPKSIWDAT AVEASGGTAD HACQEAAYLM MARLRERHNY 120
121 IFHDTAYRYH PRRANS
|
| Detection Method: |  |
| Confidence: | 10.086186 |
| Match: | PF05754.6 |
| Description: | No description for PF05754.6 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
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Region A: Residues: [137-252] |
1 11 21 31 41 51
| | | | | |
1 DDVSSFRPTA GENDTTFGHM CAVMRGLDRM HSDLHKATKA LNDGKLMRIV TLKDEIARLK 60
61 KENAQLKGLP APGGVRIRST PRKRTTAPVR IQLAPRNPPP AAAPAAPPVP PAVPAA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
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Region A: Residues: [253-520] |
1 11 21 31 41 51
| | | | | |
1 PAPAPAFTLS FAPASAARGS ASGTGGWLSA TPSGSGETDL SGSRSRSEGP GCLFGMVYTR 60
61 TGSRATGEGS NGEERADGVH PNSDSGNGPP PLPENPTLAQ VMAHQTQMMA AMMQQMQQQH 120
121 QQMHQRMMQH AEQQHQQFGP PPPQSKLPEF LRVRPPTFSS TTNPMEANDW LHAIEKKLNL 180
181 LQCNDQEKVA FATHQLQGPA SAWWDNHMAT RPPGTEVTWA EFCRSFRKAQ VPDGVVAQKK 240
241 REFRALHQGN RTVTEYLHEF NRLARYAP
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| Detection Method: | |
| Confidence: | 25.39794 |
| Match: | 1l6nA |
| Description: | HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA); HIV-1 capsid protein |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [521-634] |
1 11 21 31 41 51
| | | | | |
1 EDVRTDAEKQ EKFMAGLDDE LTNQLISGDY ADFERLVDKA IRQEDQRNKM DRKRKAAQFR 60
61 APQGSHQRPR LTPGQQGGPT TMIVRQHRPF NPSNFHQGTS GSQNHHGSQP NRGT
|
| Detection Method: | |
| Confidence: | 30.154902 |
| Match: | 3dikA |
| Description: | No description for 3dikA was found. |
|
Region A: Residues: [635-701] |
1 11 21 31 41 51
| | | | | |
1 APRPPMAPAQ SGQPAQAKKE TGAKPGSCFN CGELGHFADK CPKPRRAGPR FIQARVNHAS 60
61 AEEAQAA
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1a1tA |
| Description: | HIV nucleocapsid |
Matching Structure (courtesy of the PDB): |
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|
Region A: Residues: [702-852] |
1 11 21 31 41 51
| | | | | |
1 PEVVLGTFPV NSIPATVLFD SGATHSFISK KFVGMHGLIR EELSTPMRVH TPGNSSTSVQ 60
61 FSPSITIEIQ RSPFLANLIL LESKDLDVIL GMDWLTKFKG VIDCANRTVT LTNEKGETVV 120
121 YKSLVSPKKG VSLNQIETEI PVDTVEKNLR K
|
| Detection Method: | |
| Confidence: | 16.522879 |
| Match: | 1w5vA |
| Description: | HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [853-1408] |
1 11 21 31 41 51
| | | | | |
1 LEDIPIVCEY PEVFLEDLTT MPPKREIEFR IDLAPGTAPI YKRPYRMAAN ELAEVKKQVD 60
61 EQLQKGYIRP STSPWGAPVI FVEKKDKTKR MCVDYRALNE VTIKNKYPLP RIDDLFDQLK 120
121 GAKVFSKVDL RSGYHQLRIR EEDIPKTAFT TRYGLYECTV MSFGLTNAPA FFMNLMNKVF 180
181 MEFLDKFVVV FIDDILIYSK SEEEHEQHLR LVLEKLKEHQ LYAKFSKCDF WLTEVKFLGH 240
241 VITAQGVAVD PSNVESVTKW TPPKTVSQIR SFLGLAGYYR RFIENFSRIA RPMTQLLKKD 300
301 EKFKWTAECD KGFEELKKKL VSAPVLILPD PTKDFQVYCD ASRHGLGCVL MQEGRVVAYA 360
361 SRQLRPHEGN YPTHDLELAA VVHALKIWRH YLIGNRCEVY TDHKSLKYIF TQPDLNLRQR 420
421 RWLELIKDYD MSIHYHPGKA NVVADALSRK SYCTALCVEG MCEELRQEFE HLNVGIVEHG 480
481 FVAALEARPT LVDQVRAAQV NDSEIAELKK NMRVGKARDF HEDEHGTIWM GERLCVPDDK 540
541 ELKDLILTEA HQTQYS
|
| Detection Method: | |
| Confidence: | 142.0 |
| Match: | 2rf2A |
| Description: | No description for 2rf2A was found. |
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Region A: Residues: [1409-1572] |
1 11 21 31 41 51
| | | | | |
1 IHPGSTKMYQ DLKEKFWWVS MRREIAEFVA LCDVCQRVKA EHQRPAGLLQ PLQIPEWKWE 60
61 EIGMDFITGL PRTSSGHDSI WVVVDRLTKV AHFIPVHTTY TGKRLAELYL ARIMRLHGVP 120
121 RKIVSDRGSQ FTSKFWQKLQ EELGTRLNFS TAYHPQTDDY AICY
|
| Detection Method: | |
| Confidence: | 33.522879 |
| Match: | 1k6yA |
| Description: | N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain |
Matching Structure (courtesy of the PDB): |
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