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Protein Overview: gi|108711445

General Information:
Name(s) found: gi|108711445 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|108711445|gb|ABF99240.1| expressed protein [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 920 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLTTPLAEA ACRKSGLSVV DMLSPFSLFK KIDVPVRTAS DQPYRLQMFK IRMVYASDVR  60
   61 KQDYEVADQR IKPVVSEANE SALPDLLSDP PQLEDVLSKP EAELCPLWIK KFNRALMRTL 120
  121 SFSEHETFDH PVACLLVVSS KDNEPISKFV DLFNTNQLPS LLNEGIMDPQ ILKHYLILHD 180
  181 QQDGPQEIAM NILAEMKSTL GLNDCKLLCI NSSTEADGAD AENSWLPYKS HGLHNQDGAC 240
  241 WLNTDDLNEI KDFMQDLASN HIIPYMEQKI RVLNQQVATT RKGFRNQIKN LWWRKRDDVP 300
  301 EAANGPMYTF TSIESQIRVL GDYAFMLRDY ELALSNYRLL STDYKLDKAW KRFAGVQEMS 360
  361 GLCYFMLDQS RKDAEYCLDS AFSTYLRIGS SGKRNATRCG IWWAEMLKTR GQYREASSVY 420
  421 YRVSNEEPSL HSAVLLEQAA CCYVLSKPPM LRKYGFHLVL AGNSYYISDQ KQHAVRAYRN 480
  481 ALFVYKQHPW SYINDHVHFN VGRWYGVLGI FDVAIKHLLE VIACSHQSLT TQSMFLNDFF 540
  541 HFVQSMGKKF DVYKLQLPVI NMPSLRVIYE DHRTYASDAD VNVSESIWQE LEEEMIPSSS 600
  601 IVRTNWLEKS PDLRKYKDSC VCVVGEAVKV RIELRNPLQI PVVVSCISLI CQLSTSLDAS 660
  661 SAVNSVLTTG AGEDIANTKP AISTFEDDGN NFTVSKLDIV LGGSETKSVQ LEVTPKVEGI 720
  721 LKLHGIRWTL SDLLVGYQYF EFDTKRKTKK GKKGPRRTLS NTLIVIKGLP KLTGCIDHLP 780
  781 TNAFAGDLRL LKLNLRNQSE YAVKNIKMKL SHPRFVIPGD LSEVDFEFPQ CLRKHVQSEI 840
  841 STVSTKRTQG DAKGLLFTFS QDIKIQEGAT FSWPIWFHAA TPGNFSLYIS LYYEMESPSE 900
  901 ITYRTLRMHY NIEVMTCACI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..140] MSA 1.05698 View MSA. No confident structure predictions are available.
    2 View Details [141..310] deduced N/A No confident structure predictions are available.
    3 View Details [311..488] PSI-BLAST 5.221849 Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form)
    4 View Details [489..666] deduced N/A No confident structure predictions are available.
    5 View Details [667..812] MSA 2.095987 View MSA. No confident structure predictions are available.
    6 View Details [813..920] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle