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Protein Overview: gi|108710040

General Information:
Name(s) found: gi|108710040 [NCBI NR]
Description(s) found:
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  • gi|108710040|gb|ABF97835.1| transposon protein, putative, Mutator sub-class, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • transposon protein, putative, Mutator sub-class, expressed [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 624 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSVKLGSK PDAFRRQGQA WFCTTGLPSD VTVEVGDMSF HLHKFPLLSK SAFLERLIEE  60
   61 TSDQDECVII LNDIPGGAKS FELVARFCYG VKIELSSENV VYLRCASEHL QMTEEIAEDN 120
  121 LISQSEIFLN QVIIRNWKDS LKALETCEDL LPHAENLQIV KRCIESLASK ATTDPNLFGW 180
  181 PIREHGIMQS PGGSVLWNGI STGARPRNFS SNWWYEDASA LSFHMYKRLI STMESRGIRP 240
  241 EIIAGSLTYY AKKYLPGLNR RHSMGAVPLT ATLSEVEQKN LLEEIDRLLP VQKGLASTRV 300
  301 LLGLLRTAMI LKASPTCISN LEKRIGMQLD HATLEDLLLP NFSYTMETLY NVECVQRILD 360
  361 HFLAMDQANG AASPCLDDVM ASPSLAPITT VAKLIDGYLA EIAPDINLKL PKFQALASAV 420
  421 PEYARPLDDG LYRAIDIYLK AHSWLSEAER EQLCRLMDCQ KLSLEACTHA AQNERLPLRV 480
  481 VVQVLFFEQL QLRTSIAGCL LVSDNLEGSR PLRSSITTSG EAGGWATAVR ENQVLKVGMD 540
  541 NMRMRLSELE KECSTMRQEI QKLGRGKSGG WASRVPKKFN LKLKSQMCSA QEGSVSEQHK 600
  601 SMSAKLDKLQ AKVSRQKKQL AGDA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..126] PSI-BLAST 24.221849 No description for 2nn2A was found.
    2 View Details [127..293] MSA 4.776991 View MSA. No confident structure predictions are available.
    3 View Details [294..428] MSA 1.175986 View MSA. No confident structure predictions are available.
    4 View Details [429..624] MSA 9.084979 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle