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View Structure Prediction Details

Protein: gi|108710040
Organism: Oryza sativa Japonica Group
Length: 624 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108710040.

Description E-value Query
Range
Subject
Range
gi|50881433 - gi|50881433|gb|AAT85278.1| NPH3 family protein [Oryza sativa (japonica cultivar-group)]
gi|125545026 - gi|125545026|gb|EAY91165.1| hypothetical protein OsI_012398 [Oryza sativa (indica cultivar-group)]
655.0 [0..1] [624..1]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSVKLGSK PDAFRRQGQA WFCTTGLPSD VTVEVGDMSF HLHKFPLLSK SAFLERLIEE  60
   61 TSDQDECVII LNDIPGGAKS FELVARFCYG VKIELSSENV VYLRCASEHL QMTEEIAEDN 120
  121 LISQSE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.221849
Match: 2nn2A
Description: No description for 2nn2A was found.

Predicted Domain #2
Region A:
Residues: [127-293]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IFLNQVIIRN WKDSLKALET CEDLLPHAEN LQIVKRCIES LASKATTDPN LFGWPIREHG  60
   61 IMQSPGGSVL WNGISTGARP RNFSSNWWYE DASALSFHMY KRLISTMESR GIRPEIIAGS 120
  121 LTYYAKKYLP GLNRRHSMGA VPLTATLSEV EQKNLLEEID RLLPVQK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [294-428]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLASTRVLLG LLRTAMILKA SPTCISNLEK RIGMQLDHAT LEDLLLPNFS YTMETLYNVE  60
   61 CVQRILDHFL AMDQANGAAS PCLDDVMASP SLAPITTVAK LIDGYLAEIA PDINLKLPKF 120
  121 QALASAVPEY ARPLD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [429-624]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGLYRAIDIY LKAHSWLSEA EREQLCRLMD CQKLSLEACT HAAQNERLPL RVVVQVLFFE  60
   61 QLQLRTSIAG CLLVSDNLEG SRPLRSSITT SGEAGGWATA VRENQVLKVG MDNMRMRLSE 120
  121 LEKECSTMRQ EIQKLGRGKS GGWASRVPKK FNLKLKSQMC SAQEGSVSEQ HKSMSAKLDK 180
  181 LQAKVSRQKK QLAGDA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle