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Protein Overview: NCBP1_ORYSJ

General Information:
Name(s) found: NCBP1_ORYSJ [Swiss-Prot]
Description(s) found:
Found 6 descriptions.
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  • Nuclear cap-binding protein subunit 1 OS=Oryza sativa subsp. japonica GN=ABH1 PE=2 SV=1 [Swiss-Prot]
    • Organism: Oryza sativa Japonica Group
    Length: 867 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAGWRTLLL RIGDRCPEYG GSADHKEHIE TCYGVLCREY EHSKDAMFEF LLQCADQLPH  60
   61 KIPFFGVLIG LINLENEDFS KGIVDTTHAN LQDALHNENR DRIRILLRFL CGLMCSKVVL 120
  121 PNSIIETFEA LLSSAATILD EETGNPSWQP RADFYVYCIL ASLPWGGSEL FEQVPDEFER 180
  181 VLVGIQSYIS IRRHFDDIAF SVFETDEGNS PNKKDFIEDL WERIQVLSRN GWKVKSVPKP 240
  241 HLSFEAQLVA GVSHRFSPIS CPPPTISQSS SEIVKGQEKH EADLKYPQRL RRLHIFPTNK 300
  301 AENMQPVDRF VVEECILDVL LFFNGCRKEC AFYLVSLPVP FRYEYLMAET IFSQLLLLPN 360
  361 PPFRPIYYTL VIIDLCKALP GAFPSVVVGA VHALFDRISN MDMECRTRLI LWFSHHLSNF 420
  421 QFIWPWQEWA YVKDLPKWAP QRVFVQEVLE REIRLSYFDK IKQSIEDAVE LEELLPPKAG 480
  481 PNFRYHSDEG KESTDGHRLS KELVAMVRGR KTQGDIISWV DEKIIPVNGA KFALDVVSQT 540
  541 LLDIGSKSFT HLITVLERYG QIISKLCPNE EMQLLLMDEV SAYWKNSTQM IAIAIDRMMG 600
  601 YRLLSNLAIV KWVFSPANVD QFHVSDRPWE ILRNAVSKTY NRIFDLRKEI QTLRKGLQAA 660
  661 KEASEKAARE LEEAKSIIEI VDGQPVPSEN PGRLRRLQAR ADKAKEGEVT TEESLEAKEA 720
  721 LLARGLEESK ELLRLLFKSF VEVLTERLPP ISADGDVPNL RAGDPNVNSS ARDPEATTME 780
  781 IDNENGGDND SQLNGQNKKI SHNVGELEQW CLCTLGYLKS FSRQYATEIW SHIAMLDQEI 840
  841 FVGNIHPLIR KAAFSGLCRP TSEGSHL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..759] PSI-BLAST 174.0 CBP80, 80KDa nuclear cap-binding protein
    2 View Details [760..867] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle