YRC Public Data Repository - Protein Structure Prediction

Protein:	NCBP1_ORYSJ
Organism:	Oryza sativa Japonica Group
Length:	867 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NCBP1_ORYSJ.

Description	E-value	Query Range	Subject Range
gi\|12621070 - gi\|12621070\|gb\|AAG54079.1\| nuclear cap-binding protein CBP80 [Oryza sativa subsp. japonica]	735.0	[0..1]	[858..1]
gi\|87240697 - gi\|87240697\|gb\|ABD32555.1\| Initiation factor eIF-4 gamma, middle [Medicago truncatula]	671.0	[0..3]	[864..2]
NCBP1_ARATH - Nuclear cap-binding protein subunit 1 OS=Arabidopsis thaliana GN=ABH1 PE=1 SV=2	653.0	[0..3]	[861..2]
gi\|114625872 - gi\|114625872\|ref\|XP_520138.2\| PREDICTED: nuclear cap binding protein subunit 1, 80kDa [Pan troglodyt...	625.0	[0..2]	[760..149]
gi\|62088046 - gi\|62088046\|dbj\|BAD92470.1\| nuclear cap binding protein subunit 1, 80kDa variant [Homo sapiens]	609.0	[0..2]	[760..41]
gi\|76624706 - gi\|76624706\|ref\|XP_873000.1\| PREDICTED: similar to 80 kDa nuclear cap binding protein (NCBP 80 kDa s...	606.0	[0..2]	[760..28]
gi\|73971412 - gi\|73971412\|ref\|XP_532003.2\| PREDICTED: similar to 80 kDa nuclear cap binding protein (NCBP 80 kDa s... tr\|M3VW75\|M3VW75... - Nuclear cap binding protein subunit 1 OS=Felis catus GN=NCBP1 PE=4 SV=1	605.0	[0..2]	[760..28]

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Predicted Domain #1

Region A:
Residues: [1-759]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAGWRTLLL RIGDRCPEYG GSADHKEHIE TCYGVLCREY EHSKDAMFEF LLQCADQLPH  60
   61 KIPFFGVLIG LINLENEDFS KGIVDTTHAN LQDALHNENR DRIRILLRFL CGLMCSKVVL 120
  121 PNSIIETFEA LLSSAATILD EETGNPSWQP RADFYVYCIL ASLPWGGSEL FEQVPDEFER 180
  181 VLVGIQSYIS IRRHFDDIAF SVFETDEGNS PNKKDFIEDL WERIQVLSRN GWKVKSVPKP 240
  241 HLSFEAQLVA GVSHRFSPIS CPPPTISQSS SEIVKGQEKH EADLKYPQRL RRLHIFPTNK 300
  301 AENMQPVDRF VVEECILDVL LFFNGCRKEC AFYLVSLPVP FRYEYLMAET IFSQLLLLPN 360
  361 PPFRPIYYTL VIIDLCKALP GAFPSVVVGA VHALFDRISN MDMECRTRLI LWFSHHLSNF 420
  421 QFIWPWQEWA YVKDLPKWAP QRVFVQEVLE REIRLSYFDK IKQSIEDAVE LEELLPPKAG 480
  481 PNFRYHSDEG KESTDGHRLS KELVAMVRGR KTQGDIISWV DEKIIPVNGA KFALDVVSQT 540
  541 LLDIGSKSFT HLITVLERYG QIISKLCPNE EMQLLLMDEV SAYWKNSTQM IAIAIDRMMG 600
  601 YRLLSNLAIV KWVFSPANVD QFHVSDRPWE ILRNAVSKTY NRIFDLRKEI QTLRKGLQAA 660
  661 KEASEKAARE LEEAKSIIEI VDGQPVPSEN PGRLRRLQAR ADKAKEGEVT TEESLEAKEA 720
  721 LLARGLEESK ELLRLLFKSF VEVLTERLPP ISADGDVPN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	174.0
Match:	1n52A
Description:	CBP80, 80KDa nuclear cap-binding protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [760-867]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRAGDPNVNS SARDPEATTM EIDNENGGDN DSQLNGQNKK ISHNVGELEQ WCLCTLGYLK  60
   61 SFSRQYATEI WSHIAMLDQE IFVGNIHPLI RKAAFSGLCR PTSEGSHL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits