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Protein Overview: gi|113547189, gi...

General Information:
Name(s) found: gi|115450235 [NCBI NR]
gi|113547189 [NCBI NR]
gi|108705795 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|115450235|ref|NP_001048718.1| Os03g0110800 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113547189|dbj|BAF10632.1| Os03g0110800 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|108705795|gb|ABF93590.1| DNA cytosine methyltransferase Zmet3, putative, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 597 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDWASDSDN DKFEWDTDGE AETSSAPALR NIDAPGPSTR LPQDANGKAN GSGALVAEFM  60
   61 GMGFPKEMIL KAIKEIGDTD TEQLLELLLT YQAIGGDASV GNCSASACAP QTLEVDEEED 120
  121 DTNWDEYDTA GNCDRTPHSD GSGDEDFFQE MSEKDEKMKS LVNMGFPEDE AKMAIDRCLD 180
  181 APVAVLVDSI YASQEAGNGY SANLSDYEDT EFSSFGGRKK TRFVDGSKKR KRYGSGPSGN 240
  241 QVPFDGSHEE PMPLPNPMVG FSLPNERLRS VHRNLPDQAL GPPFFYYENV ALAPKGVWTT 300
  301 ISRFLYDIQP EFVDSKYFCA AARKRGYIHN LPIENRSPVL PMPPKTISEA FPNTKRWWPS 360
  361 WDPRRQFNCL QTCMASAKLT ERIRCALGRF SDVPTPQVQK YVLDECRKWN LVWVGKNKVA 420
  421 PLEPDEMEFL LGYPRNHTRG VSRTERYRAL GNSFQVDTVA YHLSVLRDLF PNGMNVLSLF 480
  481 SGIGGAEVAL HRLGIHMKTV ISVEKSEVNR TILKSWWDQT QTGTLIEIAD VRHLTTERIE 540
  541 TFIRRFGGFD LVIGGSPCNN LAGSNRHHRD GLEGEHSALF YDYIRILEHV KATMSAV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..99] FFAS03 1.16 Solution Structure of UBA domain of Human Ubiquitin Associated Protein 1 (UBAP1)
    2 View Details [100..180] deduced N/A No confident structure predictions are available.
    3 View Details [181..471] PSI-BLAST 44.522879 Structure of the Q237W mutant of HhaI DNA methyltransferase: an insight into protein-protein interactions
    4 View Details [472..597] PSI-BLAST 4.045757 crystal structure of a putative RNA methyltransferase PH1948 from Pyrococcus horikoshii

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.723277178398499 bayes_pls_golite062009
  • transferase activity
    		•  0.64512166557639 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  0.54403439349476 bayes_pls_golite062009
  • methyltransferase activity
    		•  0.54389223881989 bayes_pls_golite062009
    3
    Term Confidence Notes
  • catalytic activity
    		•  0.723277178398499 bayes_pls_golite062009
  • transferase activity
    		•  0.64512166557639 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  0.54403439349476 bayes_pls_golite062009
  • methyltransferase activity
    		•  0.54389223881989 bayes_pls_golite062009
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle