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Protein Overview: CTDSP1

General Information:
Name(s) found: CTDSP1 [HGNC (HUGO)]
Description(s) found:
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  • gi|17865510|sp|Q9GZU7.1|CTDS1_HUMAN RecName: Full=Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; AltName: Full=Nuclear LIM interactor-interacting factor 3; Short=NLI-interacting factor 3; Short=NLI-IF [NCBI NR]
  • gi|15278033|gb|AAH12977.1| CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 [Homo sapiens] [NCBI NR]
  • gi|119591024|gb|EAW70618.1| CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1, isoform CRA_a [Homo sapiens] [NCBI NR]
  • gi|119591021|gb|EAW70615.1| CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1, isoform CRA_a [Homo sapiens] [NCBI NR]
  • gi|10864009|ref|NP_067021.1| CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 isoform 1 [Homo sapiens] [NCBI NR]
  • gi|10257410|gb|AAG15404.1| nuclear LIM interactor-interacting factor [Homo sapiens] [NCBI NR]
  • gi|10257407|gb|AAG15402.1|AF229162_1 nuclear LIM interactor-interacting factor [Homo sapiens] [NCBI NR]
  • CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 [HGNC (HUGO)]
  • (Q9GZU7) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 (EC 3.1.3.16) (Nuclear LIM interactor-interacting factor 3) (NLI-interacting factor 3) (NLI-IF) [Swiss-Prot]
  • Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Homo sapiens GN=CTDSP1 PE=1 SV=1 [Swiss-Prot]
  • Nuclear LIM interactor-interacting factor 3 [hmr_yeast5_DM3-1_pombe.fasta]
  • CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1; nuclear LIM interactor-interacting factor; small CTD phosphatase 1 [HMR_022704.fasta]
  • CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 [Homo sapiens]gi|15278033|gb|AAH12977.1| CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 [Homo sapiens]gi|10257410|gb|AAG15404.1| nuc [nrdb_11152004_Chlamydomonas]
  • Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 (Nuclear LIM interactor-interacting factor 3) (NLI-interacting factor 3) (NLI-IF) [Yateslab_human_na_07-28-2006_reversed.fasta]
  • Tax_Id=9606 Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 [EBI-IPI_human_3.17_05-09-2006_con_reversed.fasta]
  • (NM_021198) nuclear LIM interactor-interacting factor [Homo sapiens] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 isoform 1 [Homo sapiens] [NCBI-RefSeq_Human_na_12_06_2006_con_reversed.fasta]
  • CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1; nuclear LIM interactor-interacting factor; small CTD phosphatase 1 [Homo sapiens] [HumanGallus06162005.fasta]
  • CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1, isoform CRA_a [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • nuclear LIM interactor-interacting factor [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Tax_Id=9606 CARBOXY-TERMINAL DOMAIN RNA POLYMERASE II POLYPEPTIDE A SMALL PHOSPHATASE 1 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • RecName: Full=Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; AltName: Full=Nuclear LIM interactor-interacting factor 3; Short=NLI-interacting factor 3; Short=NLI-IF [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • Tax_Id=9606 Gene_Symbol=CTDSP1 Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 [human-ipi-250309-contam.fasta]
  • IPI:IPI00009633.1|SWISS-PROT:Q9GZU7|ENSEMBL:ENSP00000273062|REFSEQ:NP_067021|H-INV:HIT000074517|VEGA:OTTHUMP00000164141 Tax_Id=9606 Gene_Symbol=CTDSP1 Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 [ipi.HUMAN.fasta.20090807]
  • [human_BMb_040710_contam.fasta]
  • Tax_Id=9606 Gene_Symbol=CTDSP1 Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 ENSG00000144579 IPI00009633 IPI00376211 IPI00385297 IPI00449718 [drosphohumanreversed.fasta]
  • Tax_Id=9606 Gene_Symbol=CTDSP1 Isoform 1 of Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 [EBI-IPI_Human_3.71_03-24-2010_reversed.fasta]
  • carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform 1 [Homo sapiens] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • Q9GZU7;Q7Z5Q3;Q7Z5Q4; RecName: Full=Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; AltName: Full=Small C-terminal domain phosphatase 1; AltName: Full=Nuclear LIM interactor-interacting factor 3; [UniProt_Human_2010_06_06-01-2010_reversed.fasta]
  • Isoform 1 of Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Homo sapiens GN=CTDSP1 [011711_HMR.fasta]
  • IPI:IPI00009633.1|SWISS-PROT:Q9GZU7-1|ENSEMBL:ENSP00000273062|REFSEQ:NP_067021|H-INV:HIT000074517|VEGA:OTTHUMP00000164141 Tax_Id=9606 Gene_Symbol=CTDSP1 Isoform 1 of Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 [ipi.HUMAN.fasta.20100406]
  • GeneSymbol=CTDSP1 Synonyms=NLIIF|SCP1 carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform 1 [Homo sapiens] [NCBI-RefSeq_Human_Seno_07-12-2011_reversed.fasta]
  • Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 GN=CTDSP1 [Doctor+uniprot-HUMAN-120911.fasta]
  • CTD (Carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1, isoform CRA_a OS=Homo sapiens GN=CTDSP1 PE=4 SV=1 [uniprot-human-031015-contam.fasta]
    • Organism: Homo sapiens
    Length: 261 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSAVITQI SKEEARGPLR GKGDQKSAAS QKPRSRGILH SLFCCVCRDD GEALPAHSGA  60
   61 PLLVEENGAI PKQTPVQYLL PEAKAQDSDK ICVVIDLDET LVHSSFKPVN NADFIIPVEI 120
  121 DGVVHQVYVL KRPHVDEFLQ RMGELFECVL FTASLAKYAD PVADLLDKWG AFRARLFRES 180
  181 CVFHRGNYVK DLSRLGRDLR RVLILDNSPA SYVFHPDNAV PVASWFDNMS DTELHDLLPF 240
  241 FEQLSRVDDV YSVLRQPRPG S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..72] MSA 1.182994 View MSA. No confident structure predictions are available.
    2 View Details [73..261] PSI-BLAST 65.69897 Three-dimensional structure of a RNA-polymerase II binding protein with associated ligand.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • hydrolase activity
    		•  0.877696725573375 bayes_pls_golite062009
  • catalytic activity
    		•  0.786540433906087 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle