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Protein Overview: gi|115447975, gi...

General Information:
Name(s) found: gi|115447975 [NCBI NR]
gi|113537298 [NCBI NR]
Description(s) found:
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  • gi|115447975|ref|NP_001047767.1| Os02g0685900 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113537298|dbj|BAF09681.1| Os02g0685900 [Oryza sativa Japonica Group] [NCBI NR]
  • Os02g0685900 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 549 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNTCGVTLR SKYFASFRGA SQRHDEAGYA PVATSAAAAA AADEPAGKKA PRGSAAAADA  60
   61 PHAASMKRGA PAPAELTANV LGHPTPSLSE HYALGRKLGQ GQFGTTYLCT DLATGVDYAC 120
  121 KSIAKRKLIT KEDVEDVRRE IQIMHHLAGH RNVVAIKGAY EDPQYVHIVM ELCAGGELFD 180
  181 RIIERGQFSE RKAAELTRII VGVIEACHSL GVIHRDLKPE NFLLANKDDD LSLKAIDFGL 240
  241 SVFFKPGQVF TDVVGSPYYV APEVLRKCYG PEADVWTAGV ILYILLSGVP PFWAETQQGI 300
  301 FDAVLKGVID FDSDPWPVIS DSAKDLIRRM LNPRPKERLT AHEVLCHPWI CDHGVAPDRP 360
  361 LDPAVLSRIK QFSAMNKLKK MALRVIAESL SEEEIAGLKE MFKAMDTDNS GAITYDELKE 420
  421 GMRKYGSTLK DTEIRDLMEA ADVDNSGTID YIEFIAATLH LNKLEREEHL VAAFSYFDKD 480
  481 GSGYITVDEL QQACKEHNMP DAFLDDVIKE ADQDNDGRID YGEFVAMMTK GNMGVGRRTM 540
  541 RNSLNISMR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..407] PSI-BLAST 75.69897 Crystal Structure of the Auto-Inhibited Kinase Domain of Calcium/Calmodulin Activated Kinase II
    2 View Details [408..549] PSI-BLAST 23.30103 Ca2+-regulatory region (CLD) from soybean calcium-dependent protein kinase-alpha (CDPK) in the presence of Ca2+ and the junction domain (JD)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • cytoskeletal protein binding
    		•  3.49668552859347 bayes_pls_golite062009
  • motor activity
    		•  3.25814691068414 bayes_pls_golite062009
  • binding
    		•  3.17556402087346 bayes_pls_golite062009
  • tubulin binding
    		•  2.51210014078446 bayes_pls_golite062009
  • actin binding
    		•  2.38676888633305 bayes_pls_golite062009
  • microtubule binding
    		•  2.17136406283012 bayes_pls_golite062009
  • calcium ion binding
    		•  1.40919295397643 bayes_pls_golite062009
  • ion binding
    		•  1.36376383271837 bayes_pls_golite062009
  • metal ion binding
    		•  1.34827363853601 bayes_pls_golite062009
  • cation binding
    		•  1.34827363853601 bayes_pls_golite062009
  • protein binding
    		•  1.16246005294206 bayes_pls_golite062009
  • microfilament motor activity
    		•  1.0725773039399 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  1.05536109719637 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.02622810676526 bayes_pls_golite062009
  • kinase activity
    		•  1.01041521285233 bayes_pls_golite062009
  • structural constituent of muscle
    		•  0.99845401805886 bayes_pls_golite062009
  • actin filament binding
    		•  0.836375875773328 bayes_pls_golite062009
  • structural molecule activity
    		•  0.800850121197479 bayes_pls_golite062009
  • G-protein beta/gamma-subunit binding
    		•  0.77824189826064 bayes_pls_golite062009
  • transporter activity
    		•  0.594904129738596 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.450279748770607 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.346694954512987 bayes_pls_golite062009
  • transferase activity
    		•  0.297929823471296 bayes_pls_golite062009
  • actin-dependent ATPase activity
    		•  0.254497017648009 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.221865849692192 bayes_pls_golite062009
  • myosin binding
    		•  0.125186564742711 bayes_pls_golite062009
  • structural constituent of cytoskeleton
    		•  0.116648335890738 bayes_pls_golite062009
  • DNA binding
    		•  0.0960817636106102 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.0489908313324834 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle