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Protein Overview: gi|13259512, gi|...

General Information:
Name(s) found: gi|169167330 [NCBI NR]
gi|169167324 [NCBI NR]
gi|13259529 [NCBI NR]
gi|13259512 [NCBI NR]
Description(s) found:
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  • gi|169167330|ref|XP_001713783.1| PREDICTED: hypothetical protein isoform 2 [Homo sapiens] [NCBI NR]
  • gi|169167324|ref|XP_001713785.1| PREDICTED: hypothetical protein isoform 3 [Homo sapiens] [NCBI NR]
  • gi|13259529|ref|NP_075014.1| survival of motor neuron 2, centromeric isoform b [Homo sapiens] [NCBI NR]
  • gi|13259512|ref|NP_075012.1| survival of motor neuron 1, telomeric isoform b [Homo sapiens] [NCBI NR]
  • Splice isoform SMN-delta5 of Q16637 Survival motor neuron protein [hmr_yeast5_DM3-1_pombe.fasta]
  • survival of motor neuron 1, telomeric isoform b; gemin 1 [HMR_022704.fasta]
  • survival of motor neuron 2, centromeric isoform b; gemin 1 [HMR_022704.fasta]
  • survival of motor neuron 2, centromeric isoform b [Homo sapiens]gi|13259512|ref|NP_075012.1| survival of motor neuron 1, telomeric isoform b [Homo sapiens] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=9606 Splice Isoform SMN-delta5 of Survival motor neuron protein [EBI-IPI_human_3.17_05-09-2006_con_reversed.fasta]
  • (NM_022874) survival of motor neuron 1, telomeric isoform b; gemin 1 [Homo sapiens] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • (NM_022876) survival of motor neuron 2, centromeric isoform b; gemin 1 [Homo sapiens] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • survival of motor neuron 2, centromeric isoform b [Homo sapiens] [NCBI-RefSeq_Human_na_12_06_2006_con_reversed.fasta]
  • survival of motor neuron 1, telomeric isoform b [Homo sapiens] [NCBI-RefSeq_Human_na_12_06_2006_con_reversed.fasta]
  • survival of motor neuron 1, telomeric isoform b; gemin 1 [Homo sapiens] [HumanGallus06162005.fasta]
  • survival of motor neuron 2, centromeric isoform b; gemin 1 [Homo sapiens] [HumanGallus06162005.fasta]
  • PREDICTED: hypothetical protein isoform 2 [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • PREDICTED: hypothetical protein isoform 3 [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Tax_Id=9606 Isoform SMN-delta5 of Survival motor neuron protein [EBI-IPI_human_3.23_11-02-2006_con_reversed.fasta]
  • Tax_Id=9606 SPLICE ISOFORM 2 OF SURVIVAL MOTOR NEURON PROTEIN [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=9606 Gene_Symbol=SMN2;SMN1 Isoform SMN-delta5 of Survival motor neuron protein [human-ipi-250309-contam.fasta]
  • IPI:IPI00219360.1|SWISS-PROT:Q16637-2|ENSEMBL:ENSP00000305857;ENSP00000370118|REFSEQ:NP_075012;NP_075014|VEGA:OTTHUMP00000125237 Tax_Id=9606 Gene_Symbol=SMN1;SMN2 Isoform SMN-delta5 of Survival motor neuron protein [ipi.HUMAN.fasta.20090807]
  • [human_BMb_040710_contam.fasta]
  • Tax_Id=9606 Gene_Symbol=SMN1;SMN2 Isoform SMN-delta5 of Survival motor neuron protein [EBI-IPI_human_3.30_06-28-2007_con_reversed.fasta]
  • survival motor neuron protein isoform b [Homo sapiens] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • Isoform SMN-delta5 of Survival motor neuron protein OS=Homo sapiens GN=SMN1 [011711_HMR.fasta]
  • GeneSymbol=SMN2 Synonyms=BCD541|C-BCD541|FLJ76644|MGC20996|MGC5208|SMN1|SMNC survival motor neuron protein isoform b [Homo sapiens] [NCBI-RefSeq_Human_Seno_07-12-2011_reversed.fasta]
  • GeneSymbol=SMN1 Synonyms=BCD541|SMA|SMA1|SMA2|SMA3|SMA4|SMA@|SMN|SMN2|SMNT|T-BCD541 survival motor neuron protein isoform b [Homo sapiens] [NCBI-RefSeq_Human_Seno_07-12-2011_reversed.fasta]
  • IPI:IPI00219360.1|SWISS-PROT:Q16637-2|ENSEMBL:ENSP00000305857;ENSP00000370118;ENSP00000428128;ENSP00000439881|REFSEQ:NP_075012;NP_075014|VEGA:OTTHUMP00000125237;OTTHUMP00000226924 Tax_Id=9606 Gene_Symbol=SMN1;SMN2 Isoform SMN-delta5 of Survival motor neuron protein [ipi.HUMAN.20110912.fasta]
  • Isoform SMN-delta5 of Survival motor neuron protein GN=SMN1 [Doctor+uniprot-HUMAN-120911.fasta]
  • IPI:IPI00219360.1|SWISS-PROT:Q16637-2|ENSEMBL:ENSP00000305857;ENSP00000370118;ENSP00000428128|REFSEQ:NP_075012;NP_075014|VEGA:OTTHUMP00000125237;OTTHUMP00000226924 Tax_Id=9606 Gene_Symbol=SMN2;SMN1 Isoform SMN-delta5 of Survival motor neuron protein [ipi.HUMAN.fasta.20110927]
  • Isoform of Q16637, Isoform SMN-delta5 of Survival motor neuron protein OS=Homo sapiens GN=SMN1 [2016-04-human-contam-aPKC-His-Par6.fasta]
    • Organism: Homo sapiens
    Length: 262 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMSSGGSGG GVPEQEDSVL FRRGTGQSDD SDIWDDTALI KAYDKAVASF KHALKNGDIC  60
   61 ETSGKPKTTP KRKPAKKNKS QKKNTAASLQ QWKVGDKCSA IWSEDGCIYP ATIASIDFKR 120
  121 ETCVVVYTGY GNREEQNLSD LLSPICEVAN NIEQNAQENE NESQVSTDES ENSRSPGNKS 180
  181 DNIKPKSAPW NSFLPPPPPM PGPRLGPGKI IPPPPPICPD SLDDADALGS MLISWYMSGY 240
  241 HTGYYMGFRQ NQKEGRCSHS LN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..75] MSA 2.138977 View MSA. No confident structure predictions are available.
    2 View Details [76..163] PSI-BLAST 29.0 Survival motor neuron protein 1, smn
    3 View Details [164..262] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.346102840207765 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle