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Protein Overview: CE40270

General Information:
Name(s) found: CE40270 [WormBase]
Description(s) found:
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  • WBGene00011846 locus:chil-25 status:Partially_confirmed UniProt:Q22598 protein_id:CAA87665.2 [WormBase]
  • gi|115533992|ref|NP_496033.2| hypothetical protein T19H5.1 [Caenorhabditis elegans] [NCBI NR]
  • gi|109637990|emb|CAA87665.2| C. elegans protein T19H5.1, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • CE40270 WBGene00011846 chitinase-like repeats status:Predicted UniProt:Q22598_CAEEL protein_id:CAA87665.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE40270 WBGene00011846 chitinase-like repeats status:Predicted UniProt:Q22598_CAEEL protein_id:CAA87665.2| [wormORF-contam.fasta]
  • CE40270 WBGene00011846 chitinase-like repeats status:Predicted TR:Q22598 protein_id:CAA87665.1 [wormpep160-contam.fasta]
  • Hypothetical protein T19H5.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • T19H5.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE40270 WBGene00011846 chitinase-like repeats status:Predicted TR:Q22598 protein_id:CAA87665.2 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE40270 WBGene00011846 chitinase-like repeats status:Partially_confirmed UniProt:Q22598 protein_id:CAA87665.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
    • Organism: Caenorhabditis elegans
    Length: 445 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: carbohydrate metabolic process [IEALink to PubMed article]
    chitin catabolic process [IEALink to PubMed article]
    Molecular Function: chitinase activity [IEALink to PubMed article]
    hydrolase activity, hydrolyzing O-glycosyl compounds [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTREEFFEL SSPLDFRPDS NLPTRKYLCR TPGKYIYIIL FVILMLLLGI WFLIWSFDTV  60
   61 EKKSPVSNCN KRVVGYYSRS ETSKITSVQV SKLTHAVFAF VYMNSDGTLK FEKQDEEDRF 120
  121 MQLKDIVNMG TSPVKIMISI GGKENSQNFS PVIESEYRRQ IFINSILTFL KENDLDGIDL 180
  181 FWEWPCSTYK SVYLHFICEL KQQLQTKDKD YILSIVVPPP EVGGWIDGFD MNNIVQIVDF 240
  241 INVFSLDYYG PTQNDFGKIT GPTAPMFNGV PGRETFNVDH TSKVLSCETM QSNKFNIAIP 300
  301 FYTTLWENVQ GPIDKIEIFR NVNKVHGKIV GQSHMSRMIV QQKGFVLTPY SFDNATRNAF 360
  361 IYNSSTKIYL TFETDQSIVA KIEYVSEHLL GGICIWTVDK DDEGNSQLNA ISFDGLCTTG 420
  421 NVPKYDCSYW NGNTLPPTQC NLTMN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..445] PSI-BLAST 91.221849 Specificity and affnity of natural product cyclopentapeptide inhibitor Argadin against human chitinase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • growth factor activity
    		•  0.34357571678721 bayes_pls_golite062009
  • binding
    		•  0.271719737164788 bayes_pls_golite062009
  • receptor binding
    		•  0.21634641574378 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle