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Protein Overview: gi|12188746, gi|...

General Information:
Name(s) found: gi|55664364 [NCBI NR]
gi|32451579 [NCBI NR]
gi|12232373 [NCBI NR]
gi|12188746 [NCBI NR]
Description(s) found:
Found 19 descriptions.
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  • gi|55664364|emb|CAH70298.1| RAB GTPase activating protein 1 [Homo sapiens] [NCBI NR]
  • gi|32451579|gb|AAH54492.1| RABGAP1 protein [Homo sapiens] [NCBI NR]
  • gi|12232373|ref|NP_036329.2| RAB GTPase activating protein 1 [Homo sapiens] [NCBI NR]
  • gi|12188746|emb|CAB40267.2| Rab6 GTPase activating protein, GAPCenA [Homo sapiens] [NCBI NR]
    • Organism: Homo sapiens
    Length: 997 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDQPGEKEL VKRSQLDGEG DGPLSNQLSA SSTINPVPLV GLQKPEMSLP VKPGQGDSEA  60
   61 SSPFTPVADE DSVVFSKLTY LGCASVNAPR SEVEALRMMS ILRSQCQISL DVTLSVPNVS 120
  121 EGIVRLLDPQ TNTEIANYPI YKILFCVRGH DGTPESDCFA FTESHYNAEL FRIHVFRCEI 180
  181 QEAVSRILYS FATAFRRSAK QTPLSATAAP QTPDSDIFTF SVSLEIKEDD GKGYFSAVPK 240
  241 DKDRQCFKLR QGIDKKIVIY VQQTTNKELA IERCFGLLLS PGKDVRNSDM HLLDLESMGK 300
  301 SSDGKSYVIT GSWNPKSPHF QVVNEETPKD KVLFMTTAVD LVITEVQEPV RFLLETKVRV 360
  361 CSPNERLFWP FSKRSTTENF FLKLKQIKQR ERKNNTDTLY EVVCLESESE RERRKTTASP 420
  421 SVRLPQSGSQ SSVIPSPPED DEEEDNDEPL LSGSGDVSKE CAEKILETWG ELLSKWHLNL 480
  481 NVRPKQLSSL VRNGVPEALR GEVWQLLAGC HNNDHLVEKY RILITKESPQ DSAITRDINR 540
  541 TFPAHDYFKD TGGDGQDSLY KICKAYSVYD EEIGYCQGQS FLAAVLLLHM PEEQAFSVLV 600
  601 KIMFDYGLRE LFKQNFEDLH CKFYQLERLM QEYIPDLYNH FLDISLEAHM YASQWFLTLF 660
  661 TAKFPLYMVF HIIDLLLCEG ISVIFNVALG LLKTSKDDLL LTDFEGALKF FRVQLPKRYR 720
  721 SEENAKKLME LACNMKISQK KLKKYEKEYH TMREQQAQQE DPIERFEREN RRLQEANMRL 780
  781 EQENDDLAHE LVTSKIALRK DLDNAEEKAD ALNKELLMTK QKLIDAEEEK RRLEEESAQL 840
  841 KEMCRRELDK AESEIKKNSS IIGDYKQICS QLSERLEKQQ TANKVEIEKI RQKVDDCERC 900
  901 REFFNKEGRV KGISSTKEVL DEDTDEEKET LKNQLREMEL ELAQTKLQLV EAECKIQDLE 960
  961 HHLGLALNEV QAAKKTWFNR TLSSIKTATG VQGKETC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..228] FFAS03 3.31 Numb
    2 View Details [229..408] deduced N/A No confident structure predictions are available.
    3 View Details [409..540] PSI-BLAST 29.30103 No description for 2qq8A was found.
    4 View Details [541..997] PSI-BLAST 9.30103 No description for 2dfsA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.96397612302369 bayes_pls_golite062009
  • protein binding
    		•  1.85780451223644 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.3298316573981 bayes_pls_golite062009
  • actin binding
    		•  0.863119832306992 bayes_pls_golite062009
  • transporter activity
    		•  0.368466142481218 bayes_pls_golite062009
  • protein complex binding
    		•  0.317346496371944 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.1902355170931 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.0254091045498963 bayes_pls_golite062009
  • DNA binding
    		•  0.0185420422808378 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle