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Protein Overview: C22orf28

General Information:
Name(s) found: C22orf28 [HGNC (HUGO)]
Description(s) found:
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  • gi|7657015|ref|NP_055121.1| hypothetical protein LOC51493 [Homo sapiens] [NCBI NR]
  • gi|74753486|sp|Q9Y3I0.1|CV028_HUMAN RecName: Full=UPF0027 protein C22orf28 [NCBI NR]
  • gi|4886425|emb|CAB43357.1| hypothetical protein [Homo sapiens] [NCBI NR]
  • gi|47678431|emb|CAG30336.1| dJ149A16.6 [Homo sapiens] [NCBI NR]
  • gi|4468866|emb|CAB38260.1| chromosome 22 open reading frame 28 [Homo sapiens] [NCBI NR]
  • gi|189065566|dbj|BAG35405.1| unnamed protein product [Homo sapiens] [NCBI NR]
  • gi|16876850|gb|AAH16707.1| Chromosome 22 open reading frame 28 [Homo sapiens] [NCBI NR]
  • gi|16307525|gb|AAH10308.1| Chromosome 22 open reading frame 28 [Homo sapiens] [NCBI NR]
  • gi|12804223|gb|AAH02970.1| Chromosome 22 open reading frame 28 [Homo sapiens] [NCBI NR]
  • gi|119580425|gb|EAW60021.1| hypothetical protein HSPC117 [Homo sapiens] [NCBI NR]
  • chromosome 22 open reading frame 28 [HGNC (HUGO)]
  • tRNA-splicing ligase RtcB homolog OS=Homo sapiens GN=RTCB PE=1 SV=1 [Swiss-Prot]
  • UPF0027 protein C22orf28 OS=Homo sapiens GN=C22orf28 PE=1 SV=1 [Swiss-Prot]
  • Hypothetical protein [hmr_yeast5_DM3-1_pombe.fasta]
  • hypothetical protein HSPC117 [HMR_022704.fasta]
  • hypothetical protein HSPC117 [Homo sapiens]gi|16876850|gb|AAH16707.1| Hypothetical protein HSPC117 [Homo sapiens]gi|12804223|gb|AAH02970.1| Hypothetical protein HSPC117 [Homo sapiens]gi|16307525|gb|AAH10308.1| Hypothetical protein HSPC117 [Homo sapiens [nrdb_11152004_Chlamydomonas]
  • Tax_Id=9606 HSPC117 protein [EBI-IPI_human_3.17_05-09-2006_con_reversed.fasta]
  • (NM_014306) similar to C. elegens hypothetical 55.2 kD protein F16A11.2 [Homo sapiens] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • hypothetical protein LOC51493 [Homo sapiens] [NCBI-RefSeq_Human_na_12_06_2006_con_reversed.fasta]
  • hypothetical protein HSPC117 [Homo sapiens] [HumanGallus06162005.fasta]
  • dJ149A16.6 [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • UPF0027 protein C22orf28 [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • unnamed protein product [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • chromosome 22 open reading frame 28 [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • hypothetical protein [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Chromosome 22 open reading frame 28 [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Tax_Id=9606 UPF0027 protein C22orf28 [EBI-IPI_human_3.23_11-02-2006_con_reversed.fasta]
  • Tax_Id=9606 Gene_Symbol=C22orf28 UPF0027 protein C22orf28 [human-ipi-250309-contam.fasta]
  • novel protein HSPC117 [Homo sapiens] [nr-271106-contam.fasta]
  • IPI:IPI00550689.3|SWISS-PROT:Q9Y3I0|TREMBL:B2R6A8|ENSEMBL:ENSP00000216038|REFSEQ:NP_055121|H-INV:HIT000037644|VEGA:OTTHUMP00000028639 Tax_Id=9606 Gene_Symbol=C22orf28 UPF0027 protein C22orf28 [ipi.HUMAN.fasta.20090807]
  • [human_BMb_040710_contam.fasta]
  • Tax_Id=9606 Gene_Symbol=C22orf28 UPF0027 protein C22orf28 ENSG00000100220 IPI00550689 [drosphohumanreversed.fasta]
  • Q9Y3I0;B2R6A8;Q6IAI0;Q9BWL4;Q9NTH1;Q9P037;Q9P0J3; RecName: Full=UPF0027 protein C22orf28; [UniProt_Human_2010_06_06-01-2010_reversed.fasta]
  • UPF0027 protein C22orf28 OS=Homo sapiens GN=C22orf28 [011711_HMR.fasta]
  • IPI:IPI00550689.3|SWISS-PROT:Q9Y3I0|ENSEMBL:ENSP00000216038|REFSEQ:NP_055121|H-INV:HIT000037644|VEGA:OTTHUMP00000028639 Tax_Id=9606 Gene_Symbol=C22orf28 UPF0027 protein C22orf28 [ipi.HUMAN.fasta.20100406]
  • UPF0027 protein C22orf28 n=28 Tax=Euteleostomi RepID=CV028_HUMAN [UniProt_Xenopus_laevis_01-01-2011_reversed.fasta]
  • tRNA-splicing ligase RtcB homolog OS=Homo sapiens GN=C22orf28 PE=1 SV=1 [UniProt_Human_05-17-2011_reversed.fasta]
  • GeneSymbol=C22orf28 Synonyms=DJ149A16.6|RP1-149A16.6 hypothetical protein LOC51493 [Homo sapiens] [NCBI-RefSeq_Human_Seno_07-12-2011_reversed.fasta]
  • tRNA-splicing ligase RtcB homolog OS=Homo sapiens GN=C22orf28 [122011_hum.fasta]
  • IPI:IPI00550689.3|SWISS-PROT:Q9Y3I0|ENSEMBL:ENSP00000216038|REFSEQ:NP_055121|H-INV:HIT000037644|VEGA:OTTHUMP00000028639 Tax_Id=9606 Gene_Symbol=C22orf28 tRNA-splicing ligase RtcB homolog [ipi.HUMAN.20110912.fasta]
  • tRNA-splicing ligase RtcB homolog GN=C22orf28 [Doctor+uniprot-HUMAN-120911.fasta]
  • Tax_Id=9606 Gene_Symbol=C22orf28 tRNA-splicing ligase RtcB homolog [human-ipi-270911-contam-BSA.fasta]
    • Organism: Homo sapiens
    Length: 505 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSYNDELQ FLEKINKNCW RIKKGFVPNM QVEGVFYVND ALEKLMFEEL RNACRGGGVG  60
   61 GFLPAMKQIG NVAALPGIVH RSIGLPDVHS GYGFAIGNMA AFDMNDPEAV VSPGGVGFDI 120
  121 NCGVRLLRTN LDESDVQPVK EQLAQAMFDH IPVGVGSKGV IPMNAKDLEE ALEMGVDWSL 180
  181 REGYAWAEDK EHCEEYGRML QADPNKVSAR AKKRGLPQLG TLGAGNHYAE IQVVDEIFNE 240
  241 YAAKKMGIDH KGQVCVMIHS GSRGLGHQVA TDALVAMEKA MKRDKIIVND RQLACARIAS 300
  301 PEGQDYLKGM AAAGNYAWVN RSSMTFLTRQ AFAKVFNTTP DDLDLHVIYD VSHNIAKVEQ 360
  361 HVVDGKERTL LVHRKGSTRA FPPHHPLIAV DYQLTGQPVL IGGTMGTCSY VLTGTEQGMT 420
  421 ETFGTTCHGA GRALSRAKSR RNLDFQDVLD KLADMGIAIR VASPKLVMEE APESYKNVTD 480
  481 VVNTCHDAGI SKKAIKLRPI AVIKG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run gi|14317902, gi|... No Comments Cheeseman, I.M., et al. (2004)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..505] PSI-BLAST 1000.0 Hypothetical Extein Protein of PH1602 from Pyrococcus horikoshii

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.821374663778173 bayes_pls_golite062009
  • protein binding
    		•  0.141714040355612 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle