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View Structure Prediction Details

Protein: C22orf28
Organism: Homo sapiens
Length: 505 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C22orf28.

Description E-value Query
Range		 Subject
Range
RTCB_BOVIN - tRNA-splicing ligase RtcB homolog OS=Bos taurus GN=RTCB PE=2 SV=1
 0.0 [1..505] [1..505]
gi|73969943 - gi|73969943|ref|XP_531754.2| PREDICTED: similar to CG9987-PA [Canis familiaris]
 0.0 [1..505] [1..505]
gi|12652799 - gi|12652799|gb|AAH00151.1| Chromosome 22 open reading frame 28 [Homo sapiens]
 0.0 [1..505] [1..505]
RTCB_PIG - tRNA-splicing ligase RtcB homolog OS=Sus scrofa GN=RTCB PE=2 SV=1
 0.0 [1..505] [1..505]
RTCB_MOUSE - tRNA-splicing ligase RtcB homolog OS=Mus musculus GN=Rtcb PE=1 SV=1
RTCB_RAT - tRNA-splicing ligase RtcB homolog OS=Rattus norvegicus GN=Rtcb PE=2 SV=1
 0.0 [1..505] [1..505]
RTCB_PAPAN - tRNA-splicing ligase RtcB homolog OS=Papio anubis GN=RTCB PE=3 SV=1
RTCB_MACFA - tRNA-splicing ligase RtcB homolog OS=Macaca fascicularis GN=RTCB PE=2 SV=1
gi|109093977 - gi|109093977|ref|XP_001112395.1| PREDICTED: similar to CG9987-PA [Macaca mulatta]
CCDS13905.1_1 - null
 0.0 [1..505] [1..505]
gi|46485379, gi|... - gi|46485379|ref|NP_997497.1| hypothetical protein LOC362855 [Rattus norvegicus], gi|45861501|gb|AAS7...
 0.0 [1..505] [1..505]

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Predicted Domain #1
Region A:
Residues: [1-505] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSYNDELQ FLEKINKNCW RIKKGFVPNM QVEGVFYVND ALEKLMFEEL RNACRGGGVG  60
   61 GFLPAMKQIG NVAALPGIVH RSIGLPDVHS GYGFAIGNMA AFDMNDPEAV VSPGGVGFDI 120
  121 NCGVRLLRTN LDESDVQPVK EQLAQAMFDH IPVGVGSKGV IPMNAKDLEE ALEMGVDWSL 180
  181 REGYAWAEDK EHCEEYGRML QADPNKVSAR AKKRGLPQLG TLGAGNHYAE IQVVDEIFNE 240
  241 YAAKKMGIDH KGQVCVMIHS GSRGLGHQVA TDALVAMEKA MKRDKIIVND RQLACARIAS 300
  301 PEGQDYLKGM AAAGNYAWVN RSSMTFLTRQ AFAKVFNTTP DDLDLHVIYD VSHNIAKVEQ 360
  361 HVVDGKERTL LVHRKGSTRA FPPHHPLIAV DYQLTGQPVL IGGTMGTCSY VLTGTEQGMT 420
  421 ETFGTTCHGA GRALSRAKSR RNLDFQDVLD KLADMGIAIR VASPKLVMEE APESYKNVTD 480
  481 VVNTCHDAGI SKKAIKLRPI AVIKG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1uc2A
Description: Hypothetical Extein Protein of PH1602 from Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.821374663778173 bayes_pls_golite062009
protein binding 0.141714040355612 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle