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Protein Overview: SYN8

General Information:
Name(s) found: SYN8 / YAL014C [SGD]
Description(s) found:
Found 25 descriptions.
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  • Endosomal SNARE related to mammalian syntaxin 8 [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 255 amino acids

    Gene Ontology:
    Cellular Component: endosome [TASLink to PubMed article]
    Biological Process: transport [IMPLink to PubMed article][IPILink to PubMed article]
    Molecular Function: SNAP receptor activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVLKLGYEL DQLSDLVEER TRLVSVLKLA PTSNDNVTLK RQLGSILELL QKCAPNDELI  60
   61 SRYNTILDKI PDTAVDKELY RFQQQVARNT DEVSKESLKK VRFKNDDELT VMYKDDDEQD 120
  121 EESPLPSTHT PYKDEPLQSQ LQSQSQPQPP QPMVSNQELF INQQQQLLEQ DSHLGALSQS 180
  181 IGRTHDISLD LNNEIVSQND SLLVDLENLI DNNGRNLNRA SRSMHGFNNS RFKDNGNCVI 240
  241 ILVLIVVLLL LLLVL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data SYN8 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..255] PSI-BLAST 33.09691 Syntaxin 1A N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • SNAP receptor activity
    		•  2.83778981988519 bayes_pls_golite062009
  • protein binding
    		•  2.01524199895183 bayes_pls_golite062009
  • binding
    		•  1.63807440800487 bayes_pls_golite062009
  • transporter activity
    		•  0.487715383686856 bayes_pls_golite062009
  • SNARE binding
    		•  0.44377480710212 bayes_pls_golite062009
  • protein transporter activity
    		•  0.268987748407298 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.0443963926233321 bayes_pls_golite062009


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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