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Protein Overview: PML39

General Information:
Name(s) found: PML39 / YML107C [SGD]
Description(s) found:
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  • gi|798893|emb|CAA89111.1| unknown [Saccharomyces cerevisiae] [NCBI NR]
  • sp|Q03760|YMK7_YEAST Hypothetical 45.2 kDa protein in ZDS2-URA5 intergenic region [NCBI NR]
  • pir||S53965 hypothetical protein YML107c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • (Q03760) Hypothetical 45.2 kDa protein in ZDS2-URA5 intergenic region [Swiss-Prot]
  • hypothetical protein [mips]
  • Protein required for nuclear retention of unspliced pre-mRNAs along with Mlp1p and Pml1p; anchored to nuclear pore complex via Mlp1p and Mlp2p; found with the subset of nuclear pores farthest from the nucleolus; may interact with ribosomes [SGD]
  • YML107C, Chr XIII from 55265-56425, reverse complement [yeast_orfs2]
  • Chr XIII from 55265-56425, reverse complement [yeastorf3.fasta]
  • unknown [Saccharomyces cerevisiae]gi|2497069|sp|Q03760|YMK7_YEAST Hypothetical 45.2 kDa protein in ZDS2-URA5 intergenic regiongi|1077947|pir||S53965 hypothetical protein YML107c - yeast (Saccharomyces cerevisiae) [nrdb_11152004_Chlamydomonas]
  • unknown [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 386 amino acids

    Gene Ontology:
    Cellular Component: ribosome [IDALink to PubMed article]
    nuclear pore [IDALink to PubMed article]
    Biological Process: mRNA export from nucleus [IGILink to PubMed article][IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFVLLIEYG KCLKNFQALV IRNESNCHLE IYGKGEIKHY SPGIDRKVGQ LLMEKDALEV  60
   61 RLKSIRHSLD KNTKLLPGKY RNTLGERLIT KWRYKKKSHN GSSMLPEKCK SHVQLYDDLV 120
  121 QESSKHFVGF RLHDLRALLK RICSIQNYTR HVLIEWDVRW VNPLTLASKG WEPYQSASQS 180
  181 QVPFKCCCCH AIMTIPLLKN GDDVADYTMK LNEKIWNSNI IGNHLQKCPW RENQVDLNKE 240
  241 YYLSSQNLIR EIERIHTEID RIVSGSNEFS LKRNSSRIFH YLSEKEIQKL AFFFDCKDYS 300
  301 LVGLLLLGYT KFQKDDLVQC TACFHRASLK KLEYTEFNGH ALWCRYYNKE LLPTMLLELI 360
  361 GKEDKLITKL GVGERLNKLE AVLQTL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..386] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle