Protein Overview: YHL009W-A

General Information:
Name(s) found:	YHL009W-A [SGD]
Description(s) found: SHOW ONLY BEST	gi\|7839179\|ref\|NP_058134.1\| Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag; Yhl [NCBI NR] gi\|74611733\|sp\|Q6Q5P6.1\|YH41A_YEAST RecName: Full=Transposon Ty4-H Gag polyprotein; Short=Transposon Ty4 protein A; Short=TY4A [NCBI NR] gi\|45269569\|gb\|AAS56165.1\| YHL009W-A [Saccharomyces cerevisiae] [NCBI NR] gi\|1084577\|pir\|\|S52610 TyA protein - yeast (Saccharomyces cerevisiae) retrotransposon Ty4 [NCBI NR] Transposon Ty4-H Gag polyprotein OS=Saccharomyces cerevisiae GN=TY4A-H PE=3 SV=1 [Swiss-Prot] TY4A TY4A protein [mips] - TY4A - TY4A protein [mips] Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag [SGD] YHL009W-A, Chr VIII from 85904-87145 [yeast_orfs2] Chr VIII from 85904-87145 [yeastorf3.fasta] YHL009W-A SGDID:S0007371, Chr VIII from 85904-87145, Ty ORF [yeastflysequest.fasta] TyA Gag protein; the main structural constituent of virus-like particles (VLPs) [Saccharomyces cerevisiae]gi\|1084577\|pir\|\|S52610 TyA protein - yeast (Saccharomyces cerevisiae) retrotransposon Ty4gi\|45269569\|gb\|AAS56165.1\| YHL009W-A [Saccharomyces cerevi [nrdb_11152004_Chlamydomonas] (Q6Q5P6) YHL009W-A [cerv4932.FASTAC] YHL009W-A SGDID:S000007371, Chr VIII from 85905-87146, transposable_element_gene, "TyA Gag protein; the main structural constituent of virus-like particles (VLPs)" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] YHL009W-A SGDID:S000007371, Chr VIII from 85905-87146, transposable_element_gene, "Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of viru [yeast-contam.fasta] TyA protein - yeast (Saccharomyces cerevisiae) retrotransposon Ty4 [nr-271106-contam.fasta] YHL009W-A [Saccharomyces cerevisiae] [nr-271106-contam.fasta] Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag; Yhl009w-ap [Saccharomyces cerev [nr-271106-contam.fasta] YHL009W-A SGDID:S000007371, Chr VIII from 85905-87146, transposable_element_gene, "Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag" [yeast-bovrabprots.fasta] [chemostatdb.fasta] Transposon Ty4-H Gag polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4A-H PE=3 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta] YHL009W-A SGDID:S000007371, Chr VIII from 85909-87150, Genome Release 64-1-1, transposable_element_gene, "Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag" [yeast-030211-contam.fasta] YHL009W-A SGDID:S000007371, Chr VIII from 85909-87150, Genome Release 64-2-1, transposable_element_gene, "Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag" [20141208_orf_trans.fasta]
Organism:	Saccharomyces cerevisiae
Length:	413 amino acids
Gene Ontology:
Cellular Component:	retrotransposon nucleocapsid [ISS]
Biological Process:	transposition, RNA-mediated [ISS]
Molecular Function:	RNA binding [ISS] protein binding [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPVRDETR NVIDDNISAR IQSKVKTNDT VRQTPSSLRK VSIKDEQVKQ YQRNLNRFKT  60
   61 ILNGLKAEEE KLSETDDIQM LAEKLLKLGE TIDKVENRIV DLVEKIQLLE TNENNNILHE 120
  121 HIDATGTYYL FDTLTSTNKR FYPKDCVFDY RTNNVENIPI LLNNFKKFIK KYQFDDVFEN 180
  181 DIIEIDPREN EILCKIIKEG LGESLDIMNT NTTDIFRIID GLKNKYRSLH GRDVRIRAWE 240
  241 KVLVDTTCRN SALLMNKLQK LVLMEKWIFS KCCQDCPNLK DYLQEAIMGT LHESLRNSVK 300
  301 QRLYNIPHNV GINHEEFLIN TVIETVIDLS PIADDQIENS CMYCKSVFHC SINCKKKPNR 360
  361 ELRPDSTNFS KTYYLQGAQR QQQLKSSAKR TKVLEQDTKK VKQSVQQQKT GNY

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	Qiu et al. (2008)		YDR210C-C YDR210C-D YHL009W-A YOR343W-A YOR343W-B

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..153]	deduced	N/A	No confident structure predictions are available.
2	View Details	[154..413]	deduced	N/A	No confident structure predictions are available.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Protein Overview: YHL009W-A

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: