YRC Public Data Repository - Protein Structure Prediction

Protein:	YHL009W-A
Organism:	Saccharomyces cerevisiae
Length:	413 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHL009W-A.

Description	E-value	Query Range	Subject Range
gi\|419899 - gi\|419899\|pir\|\|JC1482 TyA protein - yeast (Saccharomyces cerevisiae) retrotransposon Ty4	779.0	[0..1]	[413..1]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPVRDETR NVIDDNISAR IQSKVKTNDT VRQTPSSLRK VSIKDEQVKQ YQRNLNRFKT  60
   61 ILNGLKAEEE KLSETDDIQM LAEKLLKLGE TIDKVENRIV DLVEKIQLLE TNENNNILHE 120
  121 HIDATGTYYL FDTLTSTNKR FYPKDCVFDY RTN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [154-413]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVENIPILLN NFKKFIKKYQ FDDVFENDII EIDPRENEIL CKIIKEGLGE SLDIMNTNTT  60
   61 DIFRIIDGLK NKYRSLHGRD VRIRAWEKVL VDTTCRNSAL LMNKLQKLVL MEKWIFSKCC 120
  121 QDCPNLKDYL QEAIMGTLHE SLRNSVKQRL YNIPHNVGIN HEEFLINTVI ETVIDLSPIA 180
  181 DDQIENSCMY CKSVFHCSIN CKKKPNRELR PDSTNFSKTY YLQGAQRQQQ LKSSAKRTKV 240
  241 LEQDTKKVKQ SVQQQKTGNY