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Protein Overview: YIP4

General Information:
Name(s) found: YIP4 / YGL198W [SGD]
Description(s) found:
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  • pir||S62047 probable membrane protein YGL198w - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|1723951|sp|P53093|YGU8_YEAST Hypothetical 29.1 kDa protein in EMP24-MDS3 intergenic region [NCBI NR]
  • gi|1322828|emb|CAA96911.1| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR]
  • gi|1177630|emb|CAA62946.1| G1304 [Saccharomyces cerevisiae] [NCBI NR]
  • (P53093) Hypothetical 29.1 kDa protein in EMP24-MDS3 intergenic region [Swiss-Prot]
  • weak similarity to Yip1p [mips]
  • Protein that interacts with Rab GTPases, localized to late Golgi vesicles; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport [SGD]
  • YGL198W, Chr VII from 123594-124379 [yeast_orfs2]
  • Chr VII from 123594-124379 [yeastorf3.fasta]
  • unnamed protein product [Saccharomyces cerevisiae]gi|1177630|emb|CAA62946.1| G1304 [Saccharomyces cerevisiae]gi|2132565|pir||S62047 probable membrane protein YGL198w - yeast (Saccharomyces cerevisiae)gi|1723951|sp|P53093|YGU8_YEAST HYPOTHETICAL 29.1 KD [nrdb_11152004_Chlamydomonas]
  • unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • G1304 [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 261 amino acids

    Gene Ontology:
    Cellular Component: Golgi apparatus [IDALink to PubMed article]
    Biological Process: vesicle-mediated transport [RCALink to PubMed article]
    Molecular Function: Rab GTPase binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYGREDTTI EPDFIEPDAP LAASGGVADN IGGTMQNSGS RGTLDETVLQ TLKRDVVEIN  60
   61 SRLKQVVYPH FPSFFSPSDD GIGAADNDIS ANCDLWAPLA FIILYSLFVS HARSLFSSLF 120
  121 VSSWFILLVM ALHLRLTKPH QRVSLISYIS ISGYCLFPQV LNALVSQILL PLAYHIGKQN 180
  181 RWIVRVLSLV KLVVMALCLM WSVAAVSWVT KSKTIIEIYL WHSVFFGMAG CQLFYNTSYI 240
  241 CIKPNIHGHR IAYLASHGRK F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..140] MSA 2.023986 View MSA. No confident structure predictions are available.
    2 View Details [141..261] MSA 1.02199 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle