YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIP4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYGREDTTI EPDFIEPDAP LAASGGVADN IGGTMQNSGS RGTLDETVLQ TLKRDVVEIN  60
   61 SRLKQVVYPH FPSFFSPSDD GIGAADNDIS ANCDLWAPLA FIILYSLFVS HARSLFSSLF 120
  121 VSSWFILLVM ALHLRLTKPH QRVSLISYIS ISGYCLFPQV LNALVSQILL PLAYHIGKQN 180
  181 RWIVRVLSLV KLVVMALCLM WSVAAVSWVT KSKTIIEIYL WHSVFFGMAG CQLFYNTSYI 240
  241 CIKPNIHGHR IAYLASHGRK F

Type	Start	End	Confidence
Cytoplasmic	1	114	0.80
Transmembrane Helix	115	136	0.87
Non-Cytoplasmic	137	144	0.61
Transmembrane Helix	145	174	0.66
Cytoplasmic	175	186	0.61
Transmembrane Helix	187	209	0.89
Non-Cytoplasmic	210	217	0.68
Transmembrane Helix	218	242	0.81
Cytoplasmic	243	261	0.75