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Protein Overview: FIR1

General Information:
Name(s) found: FIR1 / YER032W [SGD]
Description(s) found:
Found 8 descriptions.
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  • Protein involved in 3' mRNA processing, interacts with Ref2p; potential Cdc28p substrate [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 925 amino acids

    Gene Ontology:
    Cellular Component: cellular bud neck [IDALink to PubMed article]
    Biological Process: RNA polyadenylation [IGILink to PubMed article][IMPLink to PubMed article]
    mRNA polyadenylation [IGILink to PubMed article][IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNKQQTSPN ITTVELTPRN NNTTYLQQDY YLISAIRLRW DRSEAFFPIM SLPVTPVKSK  60
   61 VCSTLSIQHE MDHDQCRDVL CPRENLLAIN RTNNIESVAI PRQRSSKNKK PHEHTQSQVR 120
  121 FSIPDPNEIS QDSPLKIVFP KSGNETERRM STSSLLMNSH GHLVDMHSKI LVDVPKEVWK 180
  181 FHHNRRKKCE SRHRKTRSDV RSNTSSSGKE PNHSRSKSLQ SIIVDTMNTY RATEVETSIN 240
  241 ENTSNISQVS PLNLSFDRPP PLTPEKNLYL TPESPLNRYH LPVPLEISLP PYLSPQNKDK 300
  301 KRSSLVYDGD GYSQFQEGNT SSSTESSLEQ PSSSYSDEDD SIPYAHHDVS FELNNADADK 360
  361 LLGIDENANV NLKIQRRNLK NPQHIKSKTD RECEEKNTEK NVSLKILSTP NKLIDIPDLE 420
  421 HMKSPPSTGL NGTLKFFQQF EPSEEPTSPT RQVNPESLDK LDMSFKFPSS TTNNNVDKVH 480
  481 ENRNSGDTNN EDFLKVDTSP VNQSFESRRQ MLIDLQKSPT NNNPRIHKHR RSRSVHNIDD 540
  541 ISLNFEATST PPAPTSAPSI PVEHSNPCTS IEIPKRSPLR FTSSPKTSDI PPEAQSPKNG 600
  601 SFLQEISVPS IQIIPDESIS HTREPSPSLI ECPEDENEAF STEVADHSIA IISETKSVPS 660
  661 IEPFKPLSSF NSFGQEIQNK EPTPLNQTPT DLIGKQRNCV NPHSIPFSVL SSNSQSSQSG 720
  721 SSKSSYNSEF SSNTAITDTT SQPSVTINRS TLEHNFIEEK RSIKNLGHGP PSQKNNYSFP 780
  781 RNKNTPSNRH DLDFNTIYEK RDGKMVEVIL LDEDEDVGLK NNDISRTRVC HAQKAKNEQQ 840
  841 KKRLSHCNEI LGMCDKTADD AKRIIYQLVN EKHKFSEKGQ QTKPKKSRVL PPLPFPLYDE 900
  901 KGNSLIPNKY QSSIHNDIPS HRKLK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..100] deduced N/A No confident structure predictions are available.
    2 View Details [101..336] deduced N/A No confident structure predictions are available.
    3 View Details [337..399] deduced N/A No confident structure predictions are available.
    4 View Details [400..566] deduced N/A No confident structure predictions are available.
    5 View Details [567..717] deduced N/A No confident structure predictions are available.
    6 View Details [718..925] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle