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Protein Overview: RKM2

General Information:
Name(s) found: RKM2 / YDR198C [SGD]
Description(s) found:
Found 28 descriptions.
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  • Ribosomal protein lysine methyltransferase, responsible for trimethylation of the lysine residue at position 3 of Rpl12Ap and Rpl12Bp [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 479 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: peptidyl-lysine trimethylation [IMPLink to PubMed article]
    peptidyl-lysine monomethylation [IDALink to PubMed article]
    Molecular Function: protein-lysine N-methyltransferase activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKVDVLLT WLKKSDKFYI APNISICESP ETGRGIVLSH GSIRKNDIIV SVPSSKQLNF  60
   61 HTILYHISKF NKELNIPGIT IDRKPINYED NIIEAENKAW ADPRYGLYSE LSKEFLLSLS 120
  121 SFQLVSFYIL VENFLLPKWT HNEIYSDWKP FFDVWPSMEE LRSIPAIWNC DPNSRYHSLI 180
  181 EYLPAASRKH MARISGLVRE DWETISEVVL KWNEIYGSLS CTKNSDKFTS DELFSLFVHV 240
  241 YFIINSRCLY AKIPLKIEDS PSNFTLVPYV DFMNHICESD LHCYPQLSPQ LRSEGENIIG 300
  301 IGQFTIRCGD HLYDNINEEL FLNYGAHSND FLLNEYGFVV DGNKWNYLDI SDEIIELIDD 360
  361 DKKEVKTFLL EHDYWGDYTI NETDISYRIF VALNYYVTRD ERRVRKFIEG YISEDYFKPK 420
  421 ISSVLKELLV SLTAKYTKTL SELTEKVSNL ENNLCLQNLI TIYKGYIKIL TQHLQDLQS

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Ho Y, et al. (2002) DNL4 RKM2

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..357] MSA 5.038972 View MSA. No confident structure predictions are available.
    2 View Details [358..479] deduced N/A Confident ab initio structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein methyltransferase activity
    		•  5.17416737778891 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  5.11922117538134 bayes_pls_golite062009
  • lysine N-methyltransferase activity
    		•  4.38975149400874 bayes_pls_golite062009
  • protein-lysine N-methyltransferase activity
    		•  4.38975149400874 bayes_pls_golite062009
  • histone-lysine N-methyltransferase activity
    		•  4.38975149400874 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  2.95997850922356 bayes_pls_golite062009
  • histone methyltransferase activity (H3-K9 specific)
    		•  2.79558337306904 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  2.69428385009711 bayes_pls_golite062009
  • methyltransferase activity
    		•  2.33114816345072 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  2.25175257044903 bayes_pls_golite062009
  • protein binding
    		•  0.819746654455251 bayes_pls_golite062009
  • binding
    		•  0.773331253307132 bayes_pls_golite062009
  • transferase activity
    		•  0.653108419761009 bayes_pls_golite062009
  • catalytic activity
    		•  0.414641636618101 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle