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Protein Overview: RPOC_YERPS

General Information:
Name(s) found: RPOC_YERPS [Swiss-Prot]
Description(s) found:
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  • gi|81640665|sp|Q66FQ1.1|RPOC_YERPS RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; AltName: Full=Transcriptase subunit beta'; AltName: Full=RNA polymerase subunit beta' [NCBI NR]
  • DNA-directed RNA polymerase subunit beta' OS=Yersinia pseudotuberculosis GN=rpoC PE=3 SV=1 [Swiss-Prot]
  • DNA-directed RNA polymerase subunit beta' - Yersinia pseudotuberculosis [SGD_S-Pombe_na_10-12-2006_reversed.fasta]
  • DNA-directed RNA polymerase subunit beta' OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rpoC PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Yersinia pseudotuberculosis
    Length: 1406 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDLLKFLKA QTKTEEFDAI KIALASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR  60
   61 IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP TAHIWFLKSL 120
  121 PSRIGLLLDM PLRDIERVLY FESYVVIEGG MTNLERRQIL TEEQYLDALE EFGDEFDAKM 180
  181 GAEAIQALLK NMDLEAECEI LREELNETNS ETKRKKLTKR IKLLEAFVQS GNKPEWMILT 240
  241 VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ 300
  301 EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY 360
  361 LRLHQCGLPK KMALELFKPF IYGKLELRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP 420
  421 VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA 480
  481 RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRDCVNA KGEGMVLTGP KEAERIYRAG 540
  541 LASLHARVKV RITEEIRNTE GESITRTSII DTTVGRAILW MIVPQGLPYS IVNQPLGKKA 600
  601 ISKMLNTCYR ILGLKPTVIF ADQIMYTGFA YAARSGASVG IDDMVIPEAK AGIIEEAETE 660
  661 VAEIQEQFQS GLVTAGERYN KVIDIWAAAN ERVAKAMMDN LSVEDVVNRD GVVEQQVSFN 720
  721 SIFMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR 780
  781 KGLADTALKT ANSGYLTRRL VDVAQDLVVT EDDCGTHNGI VMTPVIEGGD VKEPLRDRVL 840
  841 GRVTAEEVIK PGSADILVPR NTLLDEKWCD LLEENSVDSV KVRSVVSCET DFGVCANCYG 900
  901 RDLARGHIIN KGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASRAAAESSI QVKNKGSLKL 960
  961 SNVKFVTNAA GKLVITSRNT ELKLIDEFGR TKESYKVPYG AVMAKGDGAE VQGGETVANW1020
 1021 DPHIMPVVTE VSGFIRFADM VDGQTITRQT DELTGLSSLV VLDSAERTGS GKDLRPALKI1080
 1081 VDAKGNDVLI PGTDMPAQYF LPGKAIVQLE DGIQIGAGDT LARIPQESSG TKDITGGLPR1140
 1141 VADLFEARRP KEPAILAEIS GIISFGKETK GKRRLVISPL DGSDAYEEMI PKWRQLNVFE1200
 1201 GEVVERGDVV SDGPESPHDI LRLRGVHAVT RYITNEVQEV YRLQGVKIND KHIEVIVRQM1260
 1261 LRKGTIVDAG STDFLEGEQA EMSRVKIANR KLAAEGKIEA TFTRDLLGIT KASLATESFI1320
 1321 SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGYAYHQDRM RRKAQGEAPV1380
 1381 VPQVSADEAT ANLAELLNAG FGNNKG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1172] PSI-BLAST 1000.0 No description for 2ghoD was found.
    2 View Details [1173..1406] PSI-BLAST 66.522879 RBP1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
    		•  10.2021663255698 bayes_pls_golite062009
  • RNA polymerase activity
    		•  10.2021663255698 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  7.6240729546188 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  5.44374972993429 bayes_pls_golite062009
  • transferase activity
    		•  4.83218811360621 bayes_pls_golite062009
  • binding
    		•  1.61743849829314 bayes_pls_golite062009
  • catalytic activity
    		•  1.36406839864424 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.30860843987842 bayes_pls_golite062009
  • DNA binding
    		•  1.06504127306982 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.04375863237637 bayes_pls_golite062009
  • protein binding
    		•  0.251709363216351 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle