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Protein Overview: gi|110736462, gi...

General Information:
Name(s) found: gi|62319794 [NCBI NR]
gi|145323948 [NCBI NR]
gi|110736462 [NCBI NR]
Description(s) found:
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  • gi|62319794|dbj|BAD93800.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|145323948|ref|NP_001077563.1| HhH-GPD base excision DNA repair family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110736462|dbj|BAF00199.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • | Symbols: | HhH-GPD base excision DNA repair family protein | chr1:6744511-6745644 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | DNA glycosylase superfamily protein | chr1:6744520-6745653 FORWARD LENGTH=377 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • DNA glycosylase domain-containing protein OS=Arabidopsis thaliana GN=At1g19480 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of Q0V7V4, DNA glycosylase superfamily protein OS=Arabidopsis thaliana GN=At1g19480 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 377 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [IEA]
    base-excision repair [IEA]
    Molecular Function: catalytic activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEQSPSQPS TQCQSHPQSP KPDTHNLIPP ESTDECLDSA GVSGSIVSST TIDARRITEL  60
   61 GNVSSPPSKI PLRPRKIRKL TLDGDVSGED YKAEDISSSQ VNSPLATDGK SPGKGKLSHL 120
  121 RAITVPRIQA RPLTCEGELE TAIHYLRNAD PLLAALIDVH PPPTFESFKT PFLALIRNIL 180
  181 YQQLAMKAGN SIYTRFVSLC GGENLVVPET VLSLNPQQLR QIGVSGRKAS YLHDLARKYQ 240
  241 NGILSDSAIL NMDEKSLFTM LTMVNGIGSW SVHMFMINSL HRPDVLPVND LGVRKGVQLL 300
  301 YGLDDLPRPS QMEQHCAKWR PYRSVGSWYM WRLIEAKSTS TSAAVAAGVS LPPLEDIQQE 360
  361 HQQQQLMDPL NGVFSIG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..133] deduced N/A No confident structure predictions are available.
    2 View Details [134..347] PSI-BLAST 37.39794 No description for 2h56A was found.
    3 View Details [348..377] MSA 2.508997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.74

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle