YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110736462, gi...
Organism:	Arabidopsis thaliana
Length:	377 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110736462, gi....

Description	E-value	Query Range	Subject Range
gi\|8778423, gi\|2... - gi\|8778423\|gb\|AAF79431.1\|AC025808_13 F18O14.25 [Arabidopsis thaliana], pir\|\|H86327 protein F18O14.25...	284.0	[0..1]	[377..1]
gi\|94499836, gi\|... - gi\|94499836\|ref\|ZP_01306372.1\| A/G-specific adenine DNA glycosylase [Oceanobacter sp. RED65], gi\|944...	219.0	[0..150]	[373..13]
gi\|88792917, gi\|... - gi\|88792917\|ref\|ZP_01108635.1\| A/G-specific adenine glycosylase [Alteromonas macleodii 'Deep ecotype...	218.0	[0..149]	[375..11]
gi\|116189574, gi... - gi\|75829107\|ref\|ZP_00758424.1\| COG1194: A/G-specific DNA glycosylase [Vibrio cholerae MO10], gi\|1161...	217.0	[0..134]	[375..8]
gi\|75819192, gi\|... - gi\|75819192\|ref\|ZP_00749285.1\| COG1194: A/G-specific DNA glycosylase [Vibrio cholerae V51], gi\|11621...	217.0	[0..134]	[375..8]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEQSPSQPS TQCQSHPQSP KPDTHNLIPP ESTDECLDSA GVSGSIVSST TIDARRITEL  60
   61 GNVSSPPSKI PLRPRKIRKL TLDGDVSGED YKAEDISSSQ VNSPLATDGK SPGKGKLSHL 120
  121 RAITVPRIQA RPL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [134-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TCEGELETAI HYLRNADPLL AALIDVHPPP TFESFKTPFL ALIRNILYQQ LAMKAGNSIY  60
   61 TRFVSLCGGE NLVVPETVLS LNPQQLRQIG VSGRKASYLH DLARKYQNGI LSDSAILNMD 120
  121 EKSLFTMLTM VNGIGSWSVH MFMINSLHRP DVLPVNDLGV RKGVQLLYGL DDLPRPSQME 180
  181 QHCAKWRPYR SVGSWYMWRL IEAKSTSTSA AVAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.39794
Match:	2h56A
Description:	No description for 2h56A was found.

Predicted Domain #3

Region A:
Residues: [348-377]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVSLPPLEDI QQEHQQQQLM DPLNGVFSIG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits