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Protein Overview: gi|57899216, gi|...

General Information:
Name(s) found: gi|57899216 [NCBI NR]
gi|222619956 [NCBI NR]
gi|115442517 [NCBI NR]
gi|113535069 [NCBI NR]
Description(s) found:
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  • gi|57899216|dbj|BAD87365.1| putative pumilio domain-containing protein PPD1 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|222619956|gb|EEE56088.1| hypothetical protein OsJ_04928 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115442517|ref|NP_001045538.1| Os01g0971900 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113535069|dbj|BAF07452.1| Os01g0971900 [Oryza sativa Japonica Group] [NCBI NR]
  • Os01g0971900 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • putative pumilio domain-containing protein PPD1 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 894 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTEMAMRGE PWRRQEGEQA QAEADREREL DLFRSGSAPP TVEGSMGALH AAAAADVFLE  60
   61 DELRADPAYH SYYYSNGNIN PRLPPPLLSK EDWRSAQRLR PGLGGIGDGR KPRGGGGGRG 120
  121 GGGAGGMGPG DGLIGMPGLE IGRQNSFSGI FQDDSYQHDT DRQGANCNGT DLLSSSKVQY 180
  181 GLHRETGAIS GLHSDSKAPC LPENQNESSH SYASIIGSSL SRSASPDPEL VRRVPSPCLP 240
  241 PIGVKLGATD KKNNVGSSSF NCSSPNIIES DDLVSALSGM NLSSSRAMNG NTMDQSKLHQ 300
  301 DVDDVRKFLF DQYMDQTNGN QRHSYMKRSE QGHVKVPQEY SGASMNPSVM RSQINAGGFT 360
  361 SFNNSSVGSG FASPRLGSRS PGGSLSSRQN LTGASNLPNY VGIGSPTAAS AHQMPVDPLY 420
  421 VQFLRAAEIA ALAANCEDPL MDRANLGGSY MDLFGPQKAY LSPLLQSQKQ YSYYGNLGVG 480
  481 LGYAGNSLTS PILPSSPGGP GSPLRHGDRS MRYPSGMRNF GGSFGSWNSD LGGKMEANLV 540
  541 PSLLEEFKSN KSKSYELSEI AGHVVEFSAD QYGSRFIQQK LETASTEEKD MVFAEIMPQA 600
  601 LTLMTDVFGN YVVQKFFEHG SSAQIKELAD QLIGRVLALS LQMYGCRVIQ KAIEVVDLDQ 660
  661 QTKMVAELDG QVMRCVRDQN GNHVIQKCIE CIPQHAIQFI VSTFYGQVVM LSTHPYGCRV 720
  721 IQRVLEHCDD PKTQQIMMDE ILQSVCLLAT DQYGNYVVQH VLEHGKPHER SAIIEKLIGQ 780
  781 IVQMSQQKFA SNVIEKCLAF GNPVERQVLI GEMLGSSNES EHLEVMMKDQ FANYVVQKVL 840
  841 ETCDDQQREM ILTRIKAHLN TLKKYTYGKH IVARVEKLVA AGEKRLGLQP STAA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..524] PSI-BLAST 19.522879 No description for 1y0fB was found.
    2 View Details [525..894] PSI-BLAST 147.0 Pumilio 1


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle