YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57899216, gi\|...
Organism:	Oryza sativa Japonica Group
Length:	894 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57899216, gi|....

Description	E-value	Query Range	Subject Range
gi\|113577987, gi... - gi\|115461673\|ref\|NP_001054436.1\| Os05g0109600 [Oryza sativa (japonica cultivar-group)], gi\|113577987...	536.0	[0..28]	[894..15]
gi\|20513851 - gi\|20513851\|gb\|AAM22812.1\|AF427791_3 BPM [Hordeum vulgare]	529.0	[0..33]	[894..27]
gi\|109000900 - gi\|109000900\|ref\|XP_001096411.1\| PREDICTED: similar to pumilio 1 isoform 2 isoform 2 [Macaca mulatta...	523.0	[0..41]	[882..194]
PUM1_ARATH - Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1	522.0	[0..15]	[892..32]
gi\|114555212 - gi\|114555212\|ref\|XP_001157021.1\| PREDICTED: pumilio 1 isoform 1 [Pan troglodytes]	519.0	[0..41]	[882..194]
gi\|73950040 - gi\|73950040\|ref\|XP_865141.1\| PREDICTED: similar to pumilio 1 isoform 1 isoform 6 [Canis familiaris]	518.0	[0..41]	[882..194]
gi\|14719326 - gi\|14719326\|gb\|AAK73144.1\|AC079022_17 putative pumilio/Mpt5 family RNA-binding protein [Oryza sativa... gi\|50949037 - gi\|50949037\|ref\|XP_493876.1\| putative pumilio/Mpt5 family RNA-binding protein [Oryza sativa]	517.0	[0..28]	[894..15]
gi\|74180360 - gi\|74180360\|dbj\|BAE32346.1\| unnamed protein product [Mus musculus]	517.0	[0..41]	[882..220]

Back

Predicted Domain #1

Region A:
Residues: [1-524]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTEMAMRGE PWRRQEGEQA QAEADREREL DLFRSGSAPP TVEGSMGALH AAAAADVFLE  60
   61 DELRADPAYH SYYYSNGNIN PRLPPPLLSK EDWRSAQRLR PGLGGIGDGR KPRGGGGGRG 120
  121 GGGAGGMGPG DGLIGMPGLE IGRQNSFSGI FQDDSYQHDT DRQGANCNGT DLLSSSKVQY 180
  181 GLHRETGAIS GLHSDSKAPC LPENQNESSH SYASIIGSSL SRSASPDPEL VRRVPSPCLP 240
  241 PIGVKLGATD KKNNVGSSSF NCSSPNIIES DDLVSALSGM NLSSSRAMNG NTMDQSKLHQ 300
  301 DVDDVRKFLF DQYMDQTNGN QRHSYMKRSE QGHVKVPQEY SGASMNPSVM RSQINAGGFT 360
  361 SFNNSSVGSG FASPRLGSRS PGGSLSSRQN LTGASNLPNY VGIGSPTAAS AHQMPVDPLY 420
  421 VQFLRAAEIA ALAANCEDPL MDRANLGGSY MDLFGPQKAY LSPLLQSQKQ YSYYGNLGVG 480
  481 LGYAGNSLTS PILPSSPGGP GSPLRHGDRS MRYPSGMRNF GGSF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	1y0fB
Description:	No description for 1y0fB was found.

Predicted Domain #2

Region A:
Residues: [525-894]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSWNSDLGGK MEANLVPSLL EEFKSNKSKS YELSEIAGHV VEFSADQYGS RFIQQKLETA  60
   61 STEEKDMVFA EIMPQALTLM TDVFGNYVVQ KFFEHGSSAQ IKELADQLIG RVLALSLQMY 120
  121 GCRVIQKAIE VVDLDQQTKM VAELDGQVMR CVRDQNGNHV IQKCIECIPQ HAIQFIVSTF 180
  181 YGQVVMLSTH PYGCRVIQRV LEHCDDPKTQ QIMMDEILQS VCLLATDQYG NYVVQHVLEH 240
  241 GKPHERSAII EKLIGQIVQM SQQKFASNVI EKCLAFGNPV ERQVLIGEML GSSNESEHLE 300
  301 VMMKDQFANY VVQKVLETCD DQQREMILTR IKAHLNTLKK YTYGKHIVAR VEKLVAAGEK 360
  361 RLGLQPSTAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	147.0
Match:	1ib2A
Description:	Pumilio 1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits