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Protein Overview: ESF2_SCHPO

General Information:
Name(s) found: ESF2_SCHPO [Swiss-Prot]
Description(s) found:
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  • gi|19112550|ref|NP_595758.1| hypothetical protein SPBC28E12.05 [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • Pre-rRNA-processing protein esf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=esf2 PE=1 SV=1 [Swiss-Prot]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 334 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTAEQLFGA EEEEKYVDQD LSEDEEDERF LKAIRSSRST KPVVDVLKVK SESSADELEE  60
   61 RDAHLDRFRR DSTFESETSD HEDFSGGSEN ELDEETTKNA NSIKKISLEE VEKQRKAIKR 120
  121 SGVIYLSRIP PYMAPNKLRQ ILSQYGKIGR VYLTPESSAK RAQRLRNGGN KRVMYEEGWI 180
  181 EFESKRVAKS VAELLNTNQI GGKKSSWYHD DIWNMKYLPK FKWHHLTEQI AAENAARESR 240
  241 LKVEIEQGRK QLKQYMRNVE NAKMIEGIRK KRSERDTLNV STEFPEETKD LSEDTKPSKQ 300
  301 ARRFFGQKSI VSNRNMPTDN AKQQKVENVL RRVF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..108] PSI-BLAST 19.522879 Hu antigen C (Huc)
    2 View Details [109..334] PSI-BLAST 29.69897 Nuclear ribonucleoprotein A1 (RNP A1, UP1)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA binding
    		•  4.46119712758726 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.81920018903278 bayes_pls_golite062009
  • mRNA binding
    		•  3.05425904007847 bayes_pls_golite062009
  • binding
    		•  3.05116833253954 bayes_pls_golite062009
    		• 2.36751082234253 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.07788694919471 bayes_pls_golite062009
  • DNA binding
    		•  0.978604858165557 bayes_pls_golite062009
  • protein binding
    		•  0.89093640300829 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  0.852368751354665 bayes_pls_golite062009
  • snoRNA binding
    		•  0.80067755623586 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.56829350502235 bayes_pls_golite062009
  • transcription factor activity
    		•  0.234742017105535 bayes_pls_golite062009
  • structural molecule activity
    		•  0.0823205596024605 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle