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Protein Overview: gi|215697038, gi...

General Information:
Name(s) found: gi|56202337 [NCBI NR]
gi|215697038 [NCBI NR]
gi|115446539 [NCBI NR]
gi|113536580 [NCBI NR]
Description(s) found:
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  • gi|56202337|dbj|BAD73815.1| putative E2F homolog [Oryza sativa Japonica Group] [NCBI NR]
  • gi|215697038|dbj|BAG91032.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115446539|ref|NP_001047049.1| Os02g0537500 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113536580|dbj|BAF08963.1| Os02g0537500 [Oryza sativa Japonica Group] [NCBI NR]
  • putative E2F homolog [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • Os02g0537500 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 475 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSGRPPAA QKKILQSLRP PLPFAASSRS PFAAPNDYHR FPAGGAAAAA ASGSGGIGAG  60
   61 GAGGGGDIEE GLVIRTPQKR KAPEESDVAE SSDCMITSPG FAVSPMLTPV SGKAVKTSKS 120
  121 KTKNNKAGPQ TPTSNVGSPL NPPTPVGTCR YDSSLGLLTK KFINLLKQAP DGILDLNNAA 180
  181 ETLEVQKRRI YDITNVLEGI GLIEKTLKNR IRWKGLDDSG VELDNGLSAL QAEVENLSLK 240
  241 EQALDERISD MREKLRGLTE DENNQRWLYV TEDDIKGLPC FQNETLIAIK APHGTTLEVP 300
  301 DPDEAGDYLQ RRYRIVLRST MGPIDVYLVS QFDEKFEDLG GGATPSGHAN VPKHQPTEVF 360
  361 NTTNAGVGQC SNSVAVDNNI QHSQTIPQDP SASHDFGGMT RIIPSDIDTD ADYWLISEGD 420
  421 VSITDMWKTA PDVQWDESLD TDVFLSEDVR TPSSHNQQPS AVGGPQMQVS DMHKP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..142] MSA 1.11799 View MSA. No confident structure predictions are available.
    2 View Details [143..225] PSI-BLAST 23.221849 Cell cycle transcription factor E2F-4
    3 View Details [226..318] FFAS03 5.05 Structure of the Rb C-terminal domain bound to an E2F1-DP1 heterodimer
    4 View Details [319..373] PSI-BLAST 24.045757 Structure of the Rb C-terminal domain bound to an E2F1-DP1 heterodimer
    5 View Details [374..475] MSA 2.079996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.66

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle