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Protein Overview: RanBPM-PD

General Information:
Name(s) found: RanBPM-PD / FBpp0099887 [FlyBase]
Description(s) found:
Found 19 descriptions.
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  • The gene Ran-binding protein M is referred to in FlyBase by the symbol Dmel\RanBPM (CG42236, FBgn0250861). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:6317217..6324088. It has the cytological map location 47A7. Based on sequence similarity, it is predicted to have molecular function</span>: Ran GTPase binding. There is experimental evidence that it is involved in the biological process</span>: ovarian follicle cell adhesion; germ-line stem-cell niche homeostasis; cytoskeleton organization; dorsal appendage formation. 9 alleles are reported. The phenotypes of these alleles are annotated with: terminal filament; ovary; germline stem cell; germarium cap cell; egg chamber. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 962 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: cytoskeleton organization [IDA]
    germ-line stem-cell niche homeostasis [IMP]
    dorsal appendage formation [IMP]
    ovarian follicle cell-cell adhesion [IMP]
    Molecular Function: Ran GTPase binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENVEEAPPL SSESNSNSNN SSASSSSHQL SQSGAMGAEI APSTSRSHSH SPTPSPPVPA  60
   61 SSHDQPHPDH PSPPLNASET EARENSPHDH SPTPTFHQTA PPPTTSSTAP QRDEREQQQQ 120
  121 QEAPPLQQDQ QENSPAQDQE LHPLLDQQNQ EYPAVHQDQQ AEQNQELHHI EGLIRHRESQ 180
  181 NPEEHPPQAS LENRETLGRE DTNQEPDEPQ VRDPEIEPEA EPPPPLLLED LDEQDSGSQD 240
  241 LNEQQPPLII DANAIAETID ANAVERIDDY EDDDEEVDEE EEVVEDRVDR AGEVASVSGA 300
  301 QRLHSVAVLP RYSSASRAPR SSNNNNNNIS NHNNNNNNSN SNSLSRRTRH FYSNNGSHFS 360
  361 NDMFPSHNPR SSTQTSSPRV GGRRHHSTPA ASSNSPQHQG VDPLRLLYPN VNESETPLPR 420
  421 CWSPHDKCLS IGLSQNNLRV TYKGVGKQHS DAASVRTAYP IPSSCGLYYF EVRIISKGRN 480
  481 GYMGIGLTAQ QFRMNRLPGW DKQSYGYHGD DGNSFSSSGN GQTYGPTFTT GDVIGCCVNF 540
  541 VNNTCFYTKN GVDLGIAFRD LPTKLYPTVG LQTPGEEVDA NFGQEPFKFD KIVDMMKEMR 600
  601 SNVLRKIDRY PHLLETPENL MNRLVSTYLV HNAFSKTAEA FNGYTNQTFN EDLASIKTRQ 660
  661 KIIKLILTGK MSQAIEHTLR SFPGLLENNK NLWFALKCRQ FIEMINGADI ENVNNKVTAT 720
  721 TQTMPTNQTS VIQSTKTFKH SKSGSGNGNV NINQTQQQNN TAIPAVIKPQ GGDRPDIKNM 780
  781 LVDDNSNKCV EHDSNSMDVE MEPCQSHSNG GDSSSNGNAS AVRNSLDAID EEMDVDVSPS 840
  841 SRNCGRVIEK ILEFGKELSS MGQQLEKENL MTEEERQMLE DAFSLIAYSN PWSSPLGWLL 900
  901 CPSRRESVST TLNSAILESL NFERRPPLEY LVAHASELIK VIGQHSLGED AFITIDDVFP 960
  961 QN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..125] MSA 3.222996 View MSA. No confident structure predictions are available.
    2 View Details [126..268] deduced N/A No confident structure predictions are available.
    3 View Details [269..394] FFAS03 1.25 30S subunit
    4 View Details [395..651] PSI-BLAST 36.522879 No description for 2fnjA was found.
    5 View Details [652..787] deduced N/A No confident structure predictions are available.
    6 View Details [788..962] MSA 5.04998 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle