| Protein: | RanBPM-PD |
| Organism: | Drosophila melanogaster |
| Length: | 962 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RanBPM-PD.
| Description | E-value | Query Range |
Subject Range |
|
|
678.0 | [0..1] | [962..1] |
|
Region A: Residues: [1-125] |
1 11 21 31 41 51
| | | | | |
1 MENVEEAPPL SSESNSNSNN SSASSSSHQL SQSGAMGAEI APSTSRSHSH SPTPSPPVPA 60
61 SSHDQPHPDH PSPPLNASET EARENSPHDH SPTPTFHQTA PPPTTSSTAP QRDEREQQQQ 120
121 QEAPP
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [126-268] |
1 11 21 31 41 51
| | | | | |
1 LQQDQQENSP AQDQELHPLL DQQNQEYPAV HQDQQAEQNQ ELHHIEGLIR HRESQNPEEH 60
61 PPQASLENRE TLGREDTNQE PDEPQVRDPE IEPEAEPPPP LLLEDLDEQD SGSQDLNEQQ 120
121 PPLIIDANAI AETIDANAVE RID
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [269-394] |
1 11 21 31 41 51
| | | | | |
1 DYEDDDEEVD EEEEVVEDRV DRAGEVASVS GAQRLHSVAV LPRYSSASRA PRSSNNNNNN 60
61 ISNHNNNNNN SNSNSLSRRT RHFYSNNGSH FSNDMFPSHN PRSSTQTSSP RVGGRRHHST 120
121 PAASSN
|
| Detection Method: | |
| Confidence: | 1.25 |
| Match: | 1qd7B |
| Description: | 30S subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [395-651] |
1 11 21 31 41 51
| | | | | |
1 SPQHQGVDPL RLLYPNVNES ETPLPRCWSP HDKCLSIGLS QNNLRVTYKG VGKQHSDAAS 60
61 VRTAYPIPSS CGLYYFEVRI ISKGRNGYMG IGLTAQQFRM NRLPGWDKQS YGYHGDDGNS 120
121 FSSSGNGQTY GPTFTTGDVI GCCVNFVNNT CFYTKNGVDL GIAFRDLPTK LYPTVGLQTP 180
181 GEEVDANFGQ EPFKFDKIVD MMKEMRSNVL RKIDRYPHLL ETPENLMNRL VSTYLVHNAF 240
241 SKTAEAFNGY TNQTFNE
|
| Detection Method: | |
| Confidence: | 36.522879 |
| Match: | 2fnjA |
| Description: | No description for 2fnjA was found. |
|
Region A: Residues: [652-787] |
1 11 21 31 41 51
| | | | | |
1 DLASIKTRQK IIKLILTGKM SQAIEHTLRS FPGLLENNKN LWFALKCRQF IEMINGADIE 60
61 NVNNKVTATT QTMPTNQTSV IQSTKTFKHS KSGSGNGNVN INQTQQQNNT AIPAVIKPQG 120
121 GDRPDIKNML VDDNSN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [788-962] |
1 11 21 31 41 51
| | | | | |
1 KCVEHDSNSM DVEMEPCQSH SNGGDSSSNG NASAVRNSLD AIDEEMDVDV SPSSRNCGRV 60
61 IEKILEFGKE LSSMGQQLEK ENLMTEEERQ MLEDAFSLIA YSNPWSSPLG WLLCPSRRES 120
121 VSTTLNSAIL ESLNFERRPP LEYLVAHASE LIKVIGQHSL GEDAFITIDD VFPQN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
