YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: FBpp0292336, Obp...

General Information:
Name(s) found: FBpp0292336 [FlyBase]
Obp50c-PA / FBpp0086681 [FlyBase]
Description(s) found:
SHOW ONLY BEST
  • gi|85816138|ref|NP_725387.2| Odorant-binding protein 50c [Drosophila melanogaster] [NCBI NR]
  • gi|84795755|gb|AAM71004.2| Odorant-binding protein 50c [Drosophila melanogaster] [NCBI NR]
  • gi|66772867|gb|AAY55744.1| IP02234p [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=2R:join(10259704..10259898,10259962..10260060,10260117..10260479); ID=FBpp0292336; name=Obp50c-PB; parent=FBgn0050072,FBtr0303244; dbxref=FlyBase:FBpp0292336,FlyBase_Annotation_IDs:CG30072-PB,REFSEQ:NP_725387,GB_protein:AAM71004,FlyMine:FBpp0292336,modMine:FBpp0292336; MD5=7170cf9b56b801e6c123b38efb66de02; length=218; release=r5.43; species=Dmel; [FlyBase]
  • The gene Odorant-binding protein 50c is referred to in FlyBase by the symbol Dmel\Obp50c (CG30072, FBgn0050072). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:10259159..10260511. It has the cytological map location 50F6. Based on sequence similarity, it is predicted to have molecular function</span>: odorant binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: sensory perception of chemical stimulus. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • type=protein; loc=2R:join(10259704..10259898,10259962..10260060,10260117..10260479); ID=FBpp0086681; name=Obp50c-PA; parent=FBgn0050072,FBtr0087553; dbxref=FlyBase_Annotation_IDs:CG30072-PA,FlyBase:FBpp0086681,GB_protein:AAM71004.1,GB_protein:AAM71004.2,R [fly-100309-contam.fasta]
  • IP02234p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG30072-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Odorant-binding protein 50c CG30072-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:join(10259704..10259898,10259962..10260060,10260117..10260479); ID=FBpp0086681; name=Obp50c-PA; parent=FBgn0050072,FBtr0087553; dbxref=FlyBase_Annotation_IDs:CG30072-PA,FlyBase:FBpp0086681,GB_protein:AAM71004.1,GB_protein:AAM71004.2,REFSEQ:NP_725387,GB_protein:AAM71004; MD5=7170cf9b56b801e6c123b38efb66de02; length=218; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(10259704..10259898,10259962..10260060,10260117..10260479); ID=FBpp0086681; name=Obp50c-PA; parent=FBgn0050072,FBtr0087553; dbxref=FlyBase_Annotation_IDs:CG30072-PA,FlyBase:FBpp0086681,GB_protein:AAM71004.1,GB_protein:AAM71004.2,REFSEQ:NP_725387,GB_protein:AAM71004; MD5=7170cf9b56b801e6c123b38efb66de02; length=218; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • IP02234p OS=Drosophila melanogaster GN=Obp50c PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:join(10259704..10259898,10259962..10260060,10260117..10260479); ID=FBpp0292336; name=Obp50c-PB; parent=FBgn0050072,FBtr0303244; dbxref=FlyBase:FBpp0292336,FlyBase_Annotation_IDs:CG30072-PB,REFSEQ:NP_725387,GB_protein:AAM71004,FlyMine:FBpp0292336,modMine:FBpp0292336; MD5=7170cf9b56b801e6c123b38efb66de02; length=218; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
    • Organism: Drosophila melanogaster
    Length: 218 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: sensory perception of chemical stimulus [UNKNOWN]
    transport [IEA]
    Molecular Function: odorant binding [UNKNOWN][IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCFCCARLIS GSSRNWSYKV SRRCQTKLRL TKKMARHIAL LICSLLAMAG CDPIDVDCTR  60
   61 RQDFNIVKDC CVYPTFRFDQ FKSQCGKYMP VGAPRISPCL YECIFNKTNT VVDGAIHPDN 120
  121 ARLMLEKLFG NQDFEEAYFN GLMGCSDSVQ EMISNRRSRP QRKTEQCSPF SLFYGICAQR 180
  181 YVFNHCPSSS WSGTESCEMA RLQNMNCSKP SRGSSHRL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..218] FFAS03 1.28 Crystal structure of a pheromone binding protein from the cockroach Leucophaea maderae in complex with the fluorescent reporter ANS (1-anilinonaphtalene-8-sulfonic acid),

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • odorant binding
    		•  4.34740138836018 bayes_pls_golite062009
  • pheromone binding
    		•  2.50061185527994 bayes_pls_golite062009
  • binding
    		•  1.71868583149917 bayes_pls_golite062009
  • phenylalkylamine binding
    		•  1.10044668642283 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle