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Protein Overview: gi|57237942, gi|...

General Information:
Name(s) found: gi|57237942 [NCBI NR]
gi|57166746 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|57237942|ref|YP_179190.1| exodeoxyribonuclease VII, small subunit, putative [Campylobacter jejuni RM1221] [NCBI NR]
  • gi|57166746|gb|AAW35525.1| exodeoxyribonuclease VII, small subunit, putative [Campylobacter jejuni RM1221] [NCBI NR]
    • Organism: Campylobacter jejuni RM1221
    Length: 57 amino acids

    Gene Ontology:
    Cellular Component: exodeoxyribonuclease VII complex [ISSLink to PubMed article]
    Biological Process: DNA catabolic process [ISSLink to PubMed article]
    Molecular Function: exodeoxyribonuclease VII activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFEENLKHA NESLEKLNNQ ELALDESVKI YKEGLESIKK ARLELEKAKL EVEQIDE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..57] FFAS03 1.53 Crystal structure of Exodeoxyribonuclease VII small subunit (NP_881400.1) from Bordetella pertussis at 2.40 A resolution

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • exodeoxyribonuclease VII activity
    		•  8.68495406947562 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  1.85572827751496 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  1.47024871762881 bayes_pls_golite062009
  • exonuclease activity
    		•  1.40656177477018 bayes_pls_golite062009
  • exodeoxyribonuclease activity, producing 5'-phosphomonoesters
    		•  1.27143431510164 bayes_pls_golite062009
  • exodeoxyribonuclease activity
    		•  1.26470527517992 bayes_pls_golite062009
  • hydrolase activity
    		•  1.24809766675549 bayes_pls_golite062009
  • catalytic activity
    		•  0.585392957294978 bayes_pls_golite062009
  • nuclease activity
    		•  0.160415113052599 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.0854540216688989 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle