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Protein Overview: gi|126169995, gi...

General Information:
Name(s) found: gi|84317892 [NCBI NR]
gi|254238064 [NCBI NR]
gi|194549049 [NCBI NR]
gi|126169995 [NCBI NR]
Description(s) found:
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  • gi|84317892|ref|ZP_00966327.1| COG1158: Transcription termination factor [Pseudomonas aeruginosa C3719] [NCBI NR]
  • gi|254238064|ref|ZP_04931387.1| transcription termination factor Rho [Pseudomonas aeruginosa C3719] [NCBI NR]
  • gi|194549049|ref|YP_002084077.1| transcription termination factor Rho [Pseudomonas aeruginosa C3719] [NCBI NR]
  • gi|126169995|gb|EAZ55506.1| transcription termination factor Rho [Pseudomonas aeruginosa C3719] [NCBI NR]
  • COG1158: Transcription termination factor [Pseudomonas aeruginosa C3719] [nr-271106-contam.fasta]
    • Organism: Pseudomonas aeruginosa C3719
    Length: 419 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLTELKQKP IAELLEMSDA MGLENMARSR KQDIIFALLK KHAKSGEEIS GDGVLEILQD  60
   61 GFGFLRSADS SYLAGPDDIY VSPSQIRRFN LRTGDTIIGK IRPPKEGERY FALLKVDSIN 120
  121 FDRPENAKNK ILFENLTPLF PNERMKMEAG NGSTEDLTGR VIDLCAPIGK GQRGLIVAPP 180
  181 KAGKTIMLQN IASNITRNNP ECHLIVLLID ERPEEVTEMQ RTVRGEVVAS TFDEPPTRHV 240
  241 QVAEMVIEKA KRLVEHKKDV VILLDSITRL ARAYNTVIPS SGKVLTGGVD AHALEKPKRF 300
  301 FGAARNIEEG GSLTILATAL VETGSKMDEV IYEEFKGTGN MELPLDRKIA EKRVFPAINI 360
  361 NRSGTRREEL LTSEDELQRM WILRKILHPM DEISAIEFLI DKLKQTKTND EFFDSMKRK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..419] PSI-BLAST 144.0 Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; Transcription termination factor Rho, ATPase domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.52864900707835 bayes_pls_golite062009
  • transcription termination factor activity
    		•  1.46620917553746 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.991157380393447 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.834867065912847 bayes_pls_golite062009
  • DNA binding
    		•  0.686733725554901 bayes_pls_golite062009
  • protein binding
    		•  0.378225828131122 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle