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Protein Overview: gi|254238521, gi...

General Information:
Name(s) found: gi|84317377 [NCBI NR]
gi|254238521 [NCBI NR]
gi|194549506 [NCBI NR]
gi|126170452 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|84317377|ref|ZP_00965825.1| COG0130: Pseudouridine synthase [Pseudomonas aeruginosa C3719] [NCBI NR]
  • gi|254238521|ref|ZP_04931844.1| tRNA pseudouridine 55 synthase [Pseudomonas aeruginosa C3719] [NCBI NR]
  • gi|194549506|ref|YP_002084534.1| tRNA pseudouridine 55 synthase [Pseudomonas aeruginosa C3719] [NCBI NR]
  • gi|126170452|gb|EAZ55963.1| tRNA pseudouridine 55 synthase [Pseudomonas aeruginosa C3719] [NCBI NR]
    • Organism: Pseudomonas aeruginosa C3719
    Length: 304 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQVKRIRRS ISGILVLDKP RGMSSNQALQ KVRWLLNAEK AGHTGSLDPL ATGVLPLCFG  60
   61 EATKFSQYLL DADKGYETVM RMGITTTTGD AEGELLAERD VTVGRDDLEQ ALPRFRGDIE 120
  121 QVPPMYSALK KDGQPLYKLA RAGEVVEREA RSVTITRLDL LSFEPPCATL AVSCSKGTYV 180
  181 RTLVEDLGQV LGCGAHVAAL RRTQAGPFAL AQAITLETLE RVHAEGGPEA LDQFLMPEDS 240
  241 GLLHWPVLQL SEHSAYYWLH GQPVRAPEAP KFGWLRVQDH TGRFIGIGEV TDDGRIAPRR 300
  301 LIRS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..304] PSI-BLAST 104.0 Crystal Structure of tRNA Pseudouridine Synthase TruB and Its RNA Complex: RNA-protein Recognition Through a Combination of Rigid Docking and Induced Fit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • pseudouridine synthase activity
    		•  5.60483019625575 bayes_pls_golite062009
  • intramolecular transferase activity
    		•  4.62815459483632 bayes_pls_golite062009
  • isomerase activity
    		•  3.43067391737824 bayes_pls_golite062009
  • catalytic activity
    		•  2.39224964671205 bayes_pls_golite062009
  • ligase activity
    		•  0.636073507077293 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle