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Protein Overview: gi|123996347, gi...

General Information:
Name(s) found: gi|61358334 [NCBI NR]
gi|208968003 [NCBI NR]
gi|123996347 [NCBI NR]
gi|123981518 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|61358334|gb|AAX41550.1| tumor necrosis factor [synthetic construct] [NCBI NR]
  • gi|208968003|dbj|BAG73840.1| tumor necrosis factor [synthetic construct] [NCBI NR]
  • gi|123996347|gb|ABM85775.1| tumor necrosis factor (TNF superfamily, member 2) [synthetic construct] [NCBI NR]
  • gi|123981518|gb|ABM82588.1| tumor necrosis factor (TNF superfamily, member 2) [synthetic construct] [NCBI NR]
    • Organism: synthetic construct
    Length: 233 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTESMIRDV ELAEEALPKK TGGPQGSRRC LFLSLFSFLI VAGATTLFCL LHFGVIGPQR  60
   61 EEFPRDLSLI SPLAQAVRSS SRTPSDKPVA HVVANPQAEG QLQWLNRRAN ALLANGVELR 120
  121 DNQLVVPSEG LYLIYSQVLF KGQGCPSTHV LLTHTISRIA VSYQTKVNLL SAIKSPCQRE 180
  181 TPEGAEAKPW YEPIYLGGVF QLEKGDRLSA EINRPDYLDF AESGQVYFGI IAL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..233] PSI-BLAST 64.045757 Tumor necrosis factor (TNF)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • tumor necrosis factor receptor binding
    		•  4.41551127334596 bayes_pls_golite062009
  • receptor binding
    		•  3.37824597039547 bayes_pls_golite062009
  • tumor necrosis factor receptor superfamily binding
    		•  3.27382150819697 bayes_pls_golite062009
  • extracellular matrix structural constituent
    		•  2.99764886866547 bayes_pls_golite062009
  • protein binding
    		•  2.25413201891408 bayes_pls_golite062009
  • cytokine activity
    		•  2.15273244126886 bayes_pls_golite062009
  • binding
    		•  1.76110862494815 bayes_pls_golite062009
  • CD40 receptor binding
    		•  1.32291890442774 bayes_pls_golite062009
  • peptidase inhibitor activity
    		•  1.28185157337226 bayes_pls_golite062009
  • endopeptidase inhibitor activity
    		•  1.2326564264318 bayes_pls_golite062009
  • cell surface binding
    		•  1.12145675554147 bayes_pls_golite062009
  • structural molecule activity
    		•  0.402748748247022 bayes_pls_golite062009
  • eukaryotic cell surface binding
    		•  0.3981620493951 bayes_pls_golite062009
  • hormone activity
    		•  0.0434508002092211 bayes_pls_golite062009
  • caspase inhibitor activity
    		•  0.0237319623798404 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle