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Protein Overview: sma-9

General Information:
Name(s) found: sma-9 / CE39627 [WormBase]
Description(s) found:
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  • WBGene00004862 locus:sma-9 status:Confirmed UniProt:Q2L6U8 protein_id:CAJ58502.1 [WormBase]
  • gi|85539718|emb|CAJ58502.1| C. elegans protein T05A10.1k, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|115533526|ref|NP_001041286.1| SMAll family member (sma-9) [Caenorhabditis elegans] [NCBI NR]
  • CE39627 WBGene00004862 locus:sma-9 status:Confirmed UniProt:Q2L6U8_CAEEL protein_id:CAJ58502.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE39627 WBGene00004862 locus:sma-9 status:Confirmed UniProt:Q2L6U8_CAEEL protein_id:CAJ58502.1| [wormORF-contam.fasta]
  • CE39627 WBGene00004862 locus:sma-9 status:Confirmed TR:Q2L6U8 protein_id:CAJ58502.1 [wormpep160-contam.fasta]
  • Hypothetical protein T05A10.1k [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • SMAll family member (sma-9) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE39627 WBGene00004862 locus:sma-9 status:Confirmed UniProt:Q2L6U8 protein_id:CAJ58502.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • Isoform of B5U8M3, SMAll OS=Caenorhabditis elegans GN=sma-9 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 582 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    intracellular [IEALink to PubMed article]
    proteinaceous extracellular matrix [IEALink to PubMed article]
    Biological Process: transforming growth factor beta receptor signaling pathway [IGILink to PubMed article]
    tail tip morphogenesis [IMPLink to PubMed article]
    cell adhesion [IEALink to PubMed article]
    blood coagulation [IEALink to PubMed article]
    positive regulation of multicellular organism growth [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFAPGSGGG GAPPGQQPAQ MMMPQNISAE TYHRLNQVQR EQLNHQRLLQ AQLQTNGPGS  60
   61 VSQQQQASQQ QQQVQHVQQQ QQSQQQQQQV ASQQNQPQLQ MNAQILQALS TPQGQNLVNM 120
  121 LLMQQALNAQ QTDTQNPQQI MQHQLAQQQA QQAQQAQQAQ QARQQAEQQA QAQARHQAEQ 180
  181 QAQQQAQQQA QARQQEQQAQ LAAIQQQVTP QQFAQILHMQ QQLQQQQFQQ QQLQQQQLQQ 240
  241 QQLQQQQLQQ QQLQQQQLQQ VLQISQAQQQ AQQAQHVQSR QMQPSQQSQV QAQLQQQQQL 300
  301 QQQQAQQLSQ QQAQQQQQLQ QLQLQQFLQQ QQQLHQQRAA AQQAQAQNNA SQQRPSVAST 360
  361 PALSSTPQLN DLTQTMQAQL QQQLLLQQQQ AQAQQAQQAQ QAQLAQQAQQ QQQGQSQNRT 420
  421 VSQALQYIQS MQLQQRADGT PNAIVEKLRN EADKDEQGSV VPTTSIPAPQ PVALTPEMIR 480
  481 ALANAQTPVT ASMTNTPSTA QFPVGVVSTP SQLQQLHYVA QSNCGSTGVS NTKSVIPIGI 540
  541 VLNAVQKESS FGLGNTRERH AQNNSTNLGD SVQSTSQSST SS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..315] PSI-BLAST 14.522879 Heavy meromyosin subfragment
    2 View Details [316..503] PSI-BLAST 3.30103 No description for 2dfsA was found.
    3 View Details [504..582] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle