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Protein Overview: HMGA1_RAT

General Information:
Name(s) found: HMGA1_RAT [Swiss-Prot]
Description(s) found:
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  • gi|83288238|sp|Q8K585.3|HMGA1_RAT RecName: Full=High mobility group protein HMG-I/HMG-Y; Short=HMG-I(Y); AltName: Full=High mobility group AT-hook protein 1; Short=High mobility group protein A1 [NCBI NR]
  • gi|149043438|gb|EDL96889.1| rCG61008, isoform CRA_a [Rattus norvegicus] [NCBI NR]
  • gi|149043436|gb|EDL96887.1| rCG61008, isoform CRA_a [Rattus norvegicus] [NCBI NR]
  • High mobility group protein HMG-I/HMG-Y OS=Rattus norvegicus GN=Hmga1 PE=1 SV=3 [Swiss-Prot]
  • Tax_Id=10116 high mobility group AT-hook 1 [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta]
  • High mobility group protein HMG-I/HMG-Y (HMG-I(Y)) (High mobility group AT-hook protein 1) (High mobility group protein A1) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • rCG61008, isoform CRA_a [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 Gene_Symbol=Hmga1 Isoform HMG-I of High mobility group protein HMG-I/HMG-Y [rat-ipi-250309-contam.fasta]
  • Isoform HMG-I of High mobility group protein HMG-I/HMG-Y OS=Rattus norvegicus GN=Hmga1 [011711_HMR.fasta]
    • Organism: Rattus norvegicus
    Length: 107 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    cytosol [UNKNOWN]
    chromosome [IEA]
    chromatin [IEA]
    Biological Process: spermatogenesis [UNKNOWN]
    provirus integration [UNKNOWN]
    regulation of transcription, DNA-dependent [IEA]
    positive regulation of transcription [UNKNOWN][ISS]
    initiation of viral infection [UNKNOWN]
    Molecular Function: transcription factor activity [UNKNOWN][ISS]
    protein binding [UNKNOWN]
    ligand-dependent nuclear receptor transcription coactivator activity [UNKNOWN][ISS]
    transcription factor binding [UNKNOWN][ISS]
    retinoic acid receptor binding [UNKNOWN][ISS]
    retinoid X receptor binding [UNKNOWN][ISS]
    enzyme binding [UNKNOWN]
    peroxisome proliferator activated receptor binding [UNKNOWN][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESVSKSSQ PLASKQEKDG TEKRGRGRPR KQPSVSPGTA LVGSQKEPSE VPTPKRPRGR  60
   61 PKGSKNKGTA KTRKVTTTPG RKPRGRPKKL EKEEEEGISQ ESSEEEQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle