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Protein Overview: NCKP1_ARATH

General Information:
Name(s) found: NCKP1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|85701148|sp|Q5S2C4.2|NCKP1_ARATH RecName: Full=Protein NAP1; AltName: Full=Nck-associated protein 1; Short=AtNAP1; Short=AtNAP125; AltName: Full=p125Nap1; AltName: Full=NAP of plants; AltName: Full=ARP2/3 regulatory protein subunit NAPP; AltName: Full= [NCBI NR]
  • gi|79567711|ref|NP_181056.2| GRL (GNARLED); transcription activator [Arabidopsis thaliana] [NCBI NR]
  • Protein NAP1 OS=Arabidopsis thaliana GN=NAP1 PE=1 SV=2 [Swiss-Prot]
  • Tax_Id=3702 Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: GRL, NAP1, NAPP | GRL/NAP1/NAPP (NCK-ASSOCIATED PROTEIN); transcription activator | chr2:14803049-14810604 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • GRL/NAP1/NAPP; transcriptional activator [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Protein NAP1 (Nck-associated protein 1) (AtNAP1) (AtNAP125) (p125Nap1) (NAP of plants) (ARP2/3 regulatory protein subunit NAPP) (Protein GNARLED) [nr-271106-contam.fasta]
  • | Symbols: GRL, NAP1, NAPP | transcription activators | chr2:14795970-14803525 REVERSE LENGTH=1425 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1425 amino acids

    Gene Ontology:
    Cellular Component: SCAR complex [TAS]
    Biological Process: multidimensional cell growth [IMP]
    actin nucleation [TAS]
    actin filament organization [IMP]
    trichome morphogenesis [IMP]
    Molecular Function: transcription activator activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSRQYYPS QDESMSPTSV RSREWEGPSR WTEYLGPEMA ASVSSTRSSK QIDGHVGGST  60
   61 KALNIQWVVQ MIEVADGLMA KMYRLNQILE YPDPVGHVFS EAFWKAGVFP NHPRICTLLS 120
  121 KKFPEHFSKL QLERIDKFSL DSLHDGAELH LQSLEPWIQL LLDLMAFREQ ALRLILDLSS 180
  181 TVITLLPHQN SLILHAFMDL FCAFVRVNLF AEKIPRKMLL QVYNLLHALS RNDRDCDFYH 240
  241 RLVQFIDSYD PPLKGLQEDL NFVSPRIGEV LEAVGPSIFL SADTRKLRNE GFLSPYHPRF 300
  301 PDILTNSAHP MRAQDLANVT SYREWVLLGY LVCPDELLRV TSIDIALVVL KENLVVTLFR 360
  361 DEVSLYQMVC EKEFGIGISF ASADSINLTM QYILLHEDYQ LYVLPRVLES KKMAKSGRTK 420
  421 QKEADLEYSV AKQVEKMISE VHEQALQLCD TIHRERRILL KQEIGRMVLF FTDQPSLLAP 480
  481 NIQMVFSALA LAQSEVLWYF QHAGIASSRS KAARVIPVDI DPNDPTIGFL LDGMDRLCCL 540
  541 VRKYISAARG YALSYLSSSA GRIRYLMGTP GIVALDLDPT LKGLFQRIVQ HLESIPKAQG 600
  601 ENVSAITCDL SDFRKDWLSI LMIVTSSRSS INIRHLEKAT VSTGKEGLLS EGNAAYNWSR 660
  661 CVDELESQLS KHGSLKKLYF YHQHLTTVFR NTMFGPEGRP QHCCAWLSVA SSFPECASLI 720
  721 IPEEVTKFGR DAVLYVESLI ESIMGGLEGL INILDSEGGF GALESQLLPE QAAAYLNNAS 780
  781 RISAPSVKSP RVVGGFTLPG HESYPENNKS IKMLEAAIQR LTNLCSILND MEPICVINHV 840
  841 FVLREYMREC ILGNFKRRFL TALQTDNDLQ RPSVLESLIR RHMGIVHLAE QHVSMDLTQG 900
  901 IREILLTEAF SGPVSSLHTF EKPAEQQQTT GSAVEVVCNW YMDNIIKDVS GAGILFAPRH 960
  961 KYFKSTRPVG GYFAESVTDL KELQAFVRIF GGYGVDRLDR MMKVHTAALV NCIETSLRSN1020
 1021 RELIEAAAAS MHSGDRVERD ASVRQIVDLD TVIGFCIEAG QALAFDDLLA EASGAVLEDN1080
 1081 ASLIHSMISG IVEHIPEEIP EKKEIRRIKG VANGVGVAGD HDSEWVRLIL EEVGGANDNS1140
 1141 WSLLPYFFAS FMTSNAWNTT GFNIETGGFS NNIHCLARCI SAVIAGSEYV RLQREYQQQH1200
 1201 QSLSNGHHSS ENLDSEFPPR VTAEASIKSS MLLFVKFAAS IVLDSWSEAN RSHLVAKLIF1260
 1261 LDQLCEISPY LPRSSLESHV PYTILRSIYT QYYSNTPSTP LSTASPYHSP SVSLIHASPS1320
 1321 MKNSTTPQRG SGSGSSSTAA PDSGYFKGSS SSLYGQEHYT ESETGNSRNN ENNNNNKQRG1380
 1381 SSRRSGPLDY SSSHKGGSGS NSTGPSPLPR FAVSRSGPIS YKQHN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..107] MSA 1.015962 View MSA. No confident structure predictions are available.
    2 View Details [108..186] MSA 1.016994 View MSA. No confident structure predictions are available.
    3 View Details [187..313] deduced N/A No confident structure predictions are available.
    4 View Details [314..449] deduced N/A No confident structure predictions are available.
    5 View Details [450..573] MSA 1.022956 View MSA. No confident structure predictions are available.
    6 View Details [574..791] deduced N/A No confident structure predictions are available.
    7 View Details [792..856] deduced N/A No confident structure predictions are available.
    8 View Details [857..969] deduced N/A No confident structure predictions are available.
    9 View Details [970..1079] MSA 1.031969 View MSA. No confident structure predictions are available.
    10 View Details [1080..1308] MSA 1.030962 View MSA. No confident structure predictions are available.
    11 View Details [1309..1425] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle