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Protein Overview: ptr-17

General Information:
Name(s) found: ptr-17 / CE38116 [WormBase]
Description(s) found:
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  • WBGene00004231 locus:ptr-17 status:Partially_confirmed UniProt:Q5DTE6 protein_id:CAI59120.1 [WormBase]
  • gi|71993603|ref|NP_001021731.1| PaTched Related family member (ptr-17) [Caenorhabditis elegans] [NCBI NR]
  • gi|60219213|emb|CAI59120.1| C. elegans protein Y18D10A.7b, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • CE38116 WBGene00004231 locus:ptr-17 status:Partially_confirmed TR:Q5DTE6 protein_id:CAI59120.1 [wormpep150.fasta]
  • 38116 WBGene00004231 locus:ptr-17 status:Partially_confirmed TR:Q5DTE6 protein_id:CAI59120.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • CE38116 WBGene00004231 locus:ptr-17 status:Partially_confirmed UniProt:Q5DTE6_CAEEL protein_id:CAI59120.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE38116 WBGene00004231 locus:ptr-17 status:Partially_confirmed UniProt:Q5DTE6_CAEEL protein_id:CAI59120.1| [wormORF-contam.fasta]
  • PaTched Related family member (ptr-17) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein Y18D10A.7b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE38116 WBGene00004231 locus:ptr-17 status:Partially_confirmed UniProt:Q5DTE6 protein_id:CAI59120.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • Isoform of Q5DTE5, PaTched Related family OS=Caenorhabditis elegans GN=ptr-17 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 797 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: NONE FOUND
    Molecular Function: hedgehog receptor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIISKIRAAP LEQPWANIVA KYCLFVAKYP WPFIIIPLII TICLSMGIIL NFKIVRGVNY  60
   61 LYAPLNATWK TEEAVFGENW AKDDDHFYPG KDILRRQGIY LIVNAKDGGN VLRQEYAQDF 120
  121 LKILDWILNV KLLSSAGRIF TYKDVCLHFQ NDCFSNPHAK LLANIYSKNH QNSMFNITYP 180
  181 IYRSTYATEP IDISKVLGNV SLDYDGHVEN ASAWLILYQL KNEKWQLSRD FEDGLAEKIQ 240
  241 SGEAPSELLN LYYFHSATFD QELEKENRRL TPKFSITFSV LIIFAIMTTF TIKFMKFKTE 300
  301 NGINQYPVID WVLSKPLLGI CGVLVTMCAI ISSTGLLMLF NVTFVDMCTV MPFLSLTIGI 360
  361 DDTFLMLAAW HETDRNLPYE KRIEKAMRHA AVSISITSLT DALAFLIGSI APLPAVIYFC 420
  421 YYSSAAILFI FLYVLTMFVA VLALQGRREE DLKHSVTGMK TIDLDSDYET ASTRQLLLKM 480
  481 GSRVSVKADE ENNNNNNEKS IENIQKIDNR MWYQRFFEDQ YAPFISNSKI SILSFLIYLA 540
  541 YLAAAFYGVK HLKIGFDFVV TVVLTIKYKV LQLINIVQED SASRVFLEVR EQLFPEDTKL 600
  601 MDIAVMNSPN FSNPEERFNF MEVLSEFEST WCSEGRESTQ FWFFEMQKYL SNLGFGGDLT 660
  661 KTMNSERKLS QSKKTFLMSH EKFGYDVLSD KQFRLSTRLK NVETDEEMFN CARTMRKLSQ 720
  721 KHANYSIITY SPLWNIADEY DIMWPQTMQD IYISIAVMVP VALLFIPQPL CSVIIGEFCR 780
  781 IRSICSLRCL CSQTSQA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..797] PSI-BLAST 107.0 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains; Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains; Multidrug efflux transporter AcrB transmembrane domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle