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Protein Overview: cdh-9

General Information:
Name(s) found: cdh-9 / CE38081 [WormBase]
Description(s) found:
Found 14 descriptions.
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  • WBGene00000401 locus:cdh-9 status:Partially_confirmed UniProt:Q21035 protein_id:CCD63418.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 623 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    Biological Process: homophilic cell adhesion [IEALink to PubMed article]
    Molecular Function: calcium ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPYLGRSLL LLALLAQYSN TCLLKNGMSS VYLSAFEDLK PGNVIGTLPF ESQTSKETDV  60
   61 ELRVVKGNEL VDVKPGSHDL ILKKTLDRDE GVGKFEAVVE CRSSNLDTDF SQLNISVFVT 120
  121 VKDINDNAPV FDSAEYFVDI KEELPTGTIV FTDFEATDND QPGPNSFVQY TIVAGPHSHF 180
  181 LEIPDPFKPV ITIKDRINYE EIKKFSVEIE ARDQGEPSLA STVPLHVTIV DVNDLLPRFK 240
  241 HSHYTAKSQK NGVLVFEPEA ISAQDGDRLN ASLIFSLSGE LSEHFAIDND GSIRSITPNP 300
  301 PQRATFFVTA SEREDTERNS TAILSIRLQS SLAFQHNTYS TTISPTTPIG STVITVVANS 360
  361 ENNTPLTYSL LADTNTVSID EVSGNVVLRK KLEKPETLNV TASDGENVVS TALHLMTANS 420
  421 EESCRSPIKF EKFEYKMTIG KLNVLGVVNA TSRTGTKITY ILMNMNNDFE IDTNGVVKLL 480
  481 PKARLQCKVC ELIVVAKSGT QMAITKINVD NPAFVLHSTT ALTLLILIIL CLIFTMLAIL 540
  541 VCRKFCEKWK TGHRRSSICW LNGTTDTGIS ITTTTPNTTT RYVVNSDRDR CYESKSPGPK 600
  601 RSQGAHLVPV TVTSDGSTPT VYF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..508] PSI-BLAST 83.522879 W-shaped trans interactions of cadherins model based on fitting C-cadherin (1L3W) to 3D map of desmosomes obtained by electron tomography
    2 View Details [509..623] MSA 1.214977 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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