| Protein: | cdh-9 |
| Organism: | Caenorhabditis elegans |
| Length: | 623 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdh-9.
| Description | E-value | Query Range |
Subject Range |
|
|
619.0 | [0..24] | [621..24] |
|
Region A: Residues: [1-508] |
1 11 21 31 41 51
| | | | | |
1 MIPYLGRSLL LLALLAQYSN TCLLKNGMSS VYLSAFEDLK PGNVIGTLPF ESQTSKETDV 60
61 ELRVVKGNEL VDVKPGSHDL ILKKTLDRDE GVGKFEAVVE CRSSNLDTDF SQLNISVFVT 120
121 VKDINDNAPV FDSAEYFVDI KEELPTGTIV FTDFEATDND QPGPNSFVQY TIVAGPHSHF 180
181 LEIPDPFKPV ITIKDRINYE EIKKFSVEIE ARDQGEPSLA STVPLHVTIV DVNDLLPRFK 240
241 HSHYTAKSQK NGVLVFEPEA ISAQDGDRLN ASLIFSLSGE LSEHFAIDND GSIRSITPNP 300
301 PQRATFFVTA SEREDTERNS TAILSIRLQS SLAFQHNTYS TTISPTTPIG STVITVVANS 360
361 ENNTPLTYSL LADTNTVSID EVSGNVVLRK KLEKPETLNV TASDGENVVS TALHLMTANS 420
421 EESCRSPIKF EKFEYKMTIG KLNVLGVVNA TSRTGTKITY ILMNMNNDFE IDTNGVVKLL 480
481 PKARLQCKVC ELIVVAKSGT QMAITKIN
|
| Detection Method: |  |
| Confidence: | 83.522879 |
| Match: | 1q55A |
| Description: | W-shaped trans interactions of cadherins model based on fitting C-cadherin (1L3W) to 3D map of desmosomes obtained by electron tomography |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [509-623] |
1 11 21 31 41 51
| | | | | |
1 VDNPAFVLHS TTALTLLILI ILCLIFTMLA ILVCRKFCEK WKTGHRRSSI CWLNGTTDTG 60
61 ISITTTTPNT TTRYVVNSDR DRCYESKSPG PKRSQGAHLV PVTVTSDGST PTVYF
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
