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Protein Overview: lrx-1

General Information:
Name(s) found: lrx-1 / CE38413 [WormBase]
Description(s) found:
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  • WBGene00003075 locus:lrx-1 status:Partially_confirmed UniProt:Q22179 protein_id:CAB01583.2 [WormBase]
  • gi|72000323|ref|NP_506072.2| LRP X(cross)-hybridizing family member (lrx-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|62553957|emb|CAB01583.2| C. elegans protein T04H1.6, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • CE38413 WBGene00003075 locus:lrx-1 low-density lipoprotein receptor status:Partially_confirmed TR:Q22179 protein_id:CAB01583.2 [wormpep150.fasta]
  • [wormpep130-phg-ecoli-orf-rand.fasta]
  • 38413 WBGene00003075 locus:lrx-1 low-density lipoprotein receptor status:Partially_confirmed TR:Q22179 protein_id:CAB01583.2 [wormpep150-phg-orf-ecoli-rand.fasta]
  • CE38413 WBGene00003075 locus:lrx-1 low-density lipoprotein receptor status:Partially_confirmed UniProt:Q22179_CAEEL protein_id:CAB01583.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE38413 WBGene00003075 locus:lrx-1 low-density lipoprotein receptor status:Partially_confirmed UniProt:Q22179_CAEEL protein_id:CAB01583.2| [wormORF-contam.fasta]
  • Hypothetical protein T04H1.6 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • LRP X(cross)-hybridizing family member (lrx-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE38413 WBGene00003075 locus:lrx-1 low-density lipoprotein receptor status:Partially_confirmed UniProt:Q22179 protein_id:CAB01583.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE38413 WBGene00003075 locus:lrx-1 status:Partially_confirmed UniProt:Q22179 protein_id:CAB01583.2 [wormpep246-ecoli-contam.fasta]
  • LRP X(Cross)-hybridizing OS=Caenorhabditis elegans GN=lrx-1 PE=4 SV=2 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 368 amino acids

    Gene Ontology:
    Cellular Component: extracellular region [IEALink to PubMed article]
    Biological Process: chitin metabolic process [IEALink to PubMed article]
    Molecular Function: chitin binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWLTSIFFI LLAVQPVLPQ DLYGTATQQQ PYPYVQPSAS SGSGGYVPNP QSSIHTVQQP  60
   61 YPNIDVVEPD VDSVDIYETE EPQFKVVNPV FPLGGSGIVE PGTIPPPMPQ TQAPEKPDNS 120
  121 YAINYCDKRE FPDDVLAQYG LERIDYFVYN TSCSHVFFQC SIGQTFPLAC MSEDQAFDKS 180
  181 TENCNHKNAI KFCPEYDHVM HCTIKDTCTE NEFACCAMPQ SCIHVSKRCD GHPDCADGED 240
  241 ENNCPSCARD EFACVKSEHC IPANKRCDGV ADDCEDGSNL DEIGCSKNTT CIGKFVCGTS 300
  301 RGGVSCVDLD MHCDGKKDCL NGEDEMNCKQ EGRQKYLLCE NQKQSVTRLQ WCNGETDCAD 360
  361 GSDEKYCY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..105] PSI-BLAST 4.0 Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains
    2 View Details [106..368] PSI-BLAST 30.522879 Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle