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Protein Overview: RH49_ARATH

General Information:
Name(s) found: RH49_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis thaliana GN=RH49 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 558 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [IEA]
    ATP binding [IEA]
    ATP-dependent helicase activity [IEA][ISS]
    helicase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSPPKTIT KALPRFSELK PPLSEDIIEA LDRSGFEVCT PVQAETIPFL CSHKDVVVDA  60
   61 ATGSGKTLAF LLPFIEIIRR SNSYPPKPHQ VMGVIISPTR ELSAQIHKVA EPFVSTLPNV 120
  121 NSVLLVGGRE VEADMNTLEE EGANLLIGTP GRLSDMMKRM EFLDFRNLEI LILDEADRLL 180
  181 DMGFQKQVNY IISRLPKQRR TGLFSATQTQ AVADLAKAGL RNAMEVISGA ESKSKTSSGL 240
  241 YCEYLKCEAD QKSSQLVHLL IENKNKKLVV FFMTCACVDY WGLVLSKIPT LKSISFFSTH 300
  301 GKMDQKGRDT ALASFTEASS GVLLCTDVAA RGLDIPGIDY VVQYDPPQDP DVFIHRVGRT 360
  361 ARMERQGRAI VFLMPKETDY VEFMRIRRVP LQERKCSENA SDVIPIIRSL AIKDRAVLEK 420
  421 GLQAFVSFVR AYKEHHCSYI FSWKGLEIGK LAMGYGILSF PYISEVKQDR IGIVGFTPVQ 480
  481 GITFEDIKYK NKSREKQRQQ NLLARKDKLQ QEKRGKRKKS SKEAVDDSNK ASRKRKLTGR 540
  541 QRQTIQTAQD EEEMNLRL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..390] PSI-BLAST 75.522879 No description for 2i4iA was found.
    2 View Details [391..558] PSI-BLAST 3.39794 Crystal structure of SecA:ADP in an open conformation from Bacillus Subtilis


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle