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Protein Overview: gi|222424443, gi...

General Information:
Name(s) found: gi|30687988 [NCBI NR]
gi|222424443 [NCBI NR]
Description(s) found:
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  • gi|30687988|ref|NP_850950.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|222424443|dbj|BAH20177.1| AT1G22700 [Arabidopsis thaliana] [NCBI NR]
  • tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Tetratricopeptide repeat (TPR)-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | tetratricopeptide repeat (TPR)-containing protein | chr1:8028312-8029867 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:8028323-8029878 REVERSE LENGTH=301 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT1G22700 protein OS=Arabidopsis thaliana GN=At1g22700 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 301 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    chloroplast thylakoid membrane [IDA]
    Biological Process: photosystem I assembly [IMP]
    Molecular Function: binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFESNMVLQT LSSSSPPIHR LYLHHSQILP SSGSPSKISL QIHGRTLAIR SFHDYVFAEI  60
   61 SARGLPALNK ASLKKLPIKG STFLLGQSLL MVSAHPQLAA AAEIIKPEPI YEVGELFELS 120
  121 IQLSYLLLLL GLLGVGTFYV IRQVLVRREL DLSAKELQEQ VRSGDASATE LFELGAVMLR 180
  181 RKFYPAANKF LQQAIQKWDG DDQDLAQVYN ALGVSYVRED KLDKGIAQFE MAVKLQPGYV 240
  241 TAWNNLGDAY EKKKELPLAL NAFEEVLLFD PNNKVARPRR DALKDRVKLY KGVVAVKSKK 300
  301 R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..301] PSI-BLAST 44.69897 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.02652482814057 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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