YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|222424443, gi...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFESNMVLQT LSSSSPPIHR LYLHHSQILP SSGSPSKISL QIHGRTLAIR SFHDYVFAEI  60
   61 SARGLPALNK ASLKKLPIKG STFLLGQSLL MVSAHPQLAA AAEIIKPEPI YEVGELFELS 120
  121 IQLSYLLLLL GLLGVGTFYV IRQVLVRREL DLSAKELQEQ VRSGDASATE LFELGAVMLR 180
  181 RKFYPAANKF LQQAIQKWDG DDQDLAQVYN ALGVSYVRED KLDKGIAQFE MAVKLQPGYV 240
  241 TAWNNLGDAY EKKKELPLAL NAFEEVLLFD PNNKVARPRR DALKDRVKLY KGVVAVKSKK 300
  301 R

Type	Start	End	Confidence
Cytoplasmic	1	79	0.85
Transmembrane Helix	80	99	0.71
Non-Cytoplasmic	100	120	0.81
Transmembrane Helix	121	141	0.90
Cytoplasmic	142	301	0.88