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Protein Overview: gi|30685087, gi|...

General Information:
Name(s) found: gi|79325189 [NCBI NR]
gi|79325187 [NCBI NR]
gi|30685087 [NCBI NR]
gi|30685083 [NCBI NR]
gi|21593381 [NCBI NR]
gi|21436207 [NCBI NR]
gi|19423936 [NCBI NR]
gi|145323158 [NCBI NR]
Description(s) found:
Found 17 descriptions.
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  • gi|79325189|ref|NP_001031679.1| zinc finger protein (LSD1) [Arabidopsis thaliana] [NCBI NR]
  • gi|79325187|ref|NP_001031678.1| zinc finger protein (LSD1) [Arabidopsis thaliana] [NCBI NR]
  • gi|30685087|ref|NP_567599.3| zinc finger protein (LSD1) [Arabidopsis thaliana] [NCBI NR]
  • gi|30685083|ref|NP_849548.1| zinc finger protein (LSD1) [Arabidopsis thaliana] [NCBI NR]
  • gi|21593381|gb|AAM65330.1| zinc-finger protein Lsd1 [Arabidopsis thaliana] [NCBI NR]
  • gi|21436207|gb|AAM51391.1| putative zinc-finger protein Lsd1 [Arabidopsis thaliana] [NCBI NR]
  • gi|19423936|gb|AAL87301.1| putative zinc-finger protein Lsd1 [Arabidopsis thaliana] [NCBI NR]
  • gi|145323158|ref|NP_001031680.2| zinc finger protein (LSD1) [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 184 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: aerenchyma formation [IMP]
    response to hypoxia [IMP]
    cell death [IMP]
    regulation of ethylene mediated signaling pathway [IMP]
    regulation of programmed cell death [IGI]
    systemic acquired resistance, salicylic acid mediated signaling pathway [IEP]
    response to molecule of oomycetes origin [IMP]
    regulation of 1-aminocyclopropane-1-carboxylate metabolic process [IMP]
    response to superoxide [IMP]
    plant-type hypersensitive response [IMP]
    regulation of hydrogen peroxide metabolic process [IMP]
    Molecular Function: transcription factor activity [TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDQLVCHGC RNLLMYPRGA SNVRCALCNT INMVPPPPPP HDMAHIICGG CRTMLMYTRG  60
   61 ASSVRCSCCQ TTNLVPAHSN QVAHAPSSQV AQINCGHCRT TLMYPYGASS VKCAVCQFVT 120
  121 NVNMSNGRVP LPTNRPNGTA CPPSTSTSTP PSQTQTVVVE NPMSVDESGK LVSNVVVGVT 180
  181 TDKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..184] FFAS03 1.18 No description for 2i13A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle