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Protein Overview: gi|30680811, gi|...

General Information:
Name(s) found: gi|30680811 [NCBI NR]
gi|20336661 [NCBI NR]
gi|17065308 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|30680811|ref|NP_849992.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20336661|gb|AAM19346.1|AF499436_1 hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17065308|gb|AAL32808.1| Unknown protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 589 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: RNA processing [IEA][ISS]
    Molecular Function: RNA methyltransferase activity [IEA][ISS]
    RNA binding [IEA][ISS]
    methyltransferase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYCNLTRSQG FPMAIRVSLQ QTTIKSCLQF SKSSYLPVKF HLNPKGSTFA HVSTGLVSSR  60
   61 LNSMKIRMLR NPEGVREFSS FDSQRFGKRS SSNSSRGKSG LGSKAYRDKR SGGSGRSSGD 120
  121 SIWVKSDEKP VEERFQRGDR PSWEKRDGRN DSGSDRRSRS RGYGETRNRD SFRGRRDDRI 180
  181 SEVEEESKKG GGNSIWVAND DKPAKEQSPR VNNRSSWDDR TRNQNSFSAR GDDRITEEAE 240
  241 EETMNHAPED GDGIVEEEPD NTRWSEIKNR FNRYDVRDQG RDDAAYRNWN RQESWGRKTW 300
  301 QEATESSVPR LEGEVVYGVS PVLAALSVGR REFYALYVQE GLDLSSNNRK KKDKKGFERV 360
  361 LKISEKLGLN IKETSKHDLN MVADNRPHQG LVLDASPLEL VKVKELDPIS SEEEKYSLWV 420
  421 ALDEVTDPQN LGAIIRSAYF FGATGVVVCA KNSAPLSAVV SKASAGSLEV MELRYCKNMM 480
  481 QFLEASAENG WRVVGGSVSP KAVALNEVLP GSPTILVLGN EGTGLRPLVE RSCTDLVRIS 540
  541 GNMPNEVAVT ESDDAEGEGF RSFLAVESLN VSVAAGLFLH HLIGNKASA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..239] MSA 8.160996 View MSA. No confident structure predictions are available.
    2 View Details [240..310] deduced N/A No confident structure predictions are available.
    3 View Details [311..589] PSI-BLAST 60.0 RlmB, C-terminal domain; RlmB, N-terminal domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.84

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle