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Protein Overview: gi|30693208, gi|...

General Information:
Name(s) found: gi|6644278 [NCBI NR]
gi|41619134 [NCBI NR]
gi|30693208 [NCBI NR]
Description(s) found:
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  • gi|6644278|gb|AAF20989.1|AF207991_1 putative transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|41619134|gb|AAS10031.1| MYB transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|30693208|ref|NP_849749.1| HOS10 (HIGH RESPONSE TO OSMOTIC STRESS 10); DNA binding / transcription regulator [Arabidopsis thaliana] [NCBI NR]
  • putative transcription factor [Arabidopsis thaliana]gi|30693208|ref|NP_849749.1| myb family transcription factor (MYB8) [Arabidopsis thaliana]gi|41619134|gb|AAS10031.1| MYB transcription factor [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Myb family transcription factor (MYB8) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: MYB8, HOS10 | HOS10 (HIGH RESPONSE TO OSMOTIC STRESS 10); DNA binding | chr1:13077904-13080243 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • MYB transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • HOS10/MYB8 (HIGH RESPONSE TO OSMOTIC STRESS 10); DNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: HOS10, MYB8 | high response to osmotic stress 10 | chr1:13077926-13080265 FORWARD LENGTH=212 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • High response to osmotic stress 10 OS=Arabidopsis thaliana GN=MYB8 PE=2 SV=1 [ARATH-contam.fasta]
  • MYB transcription factor OS=Arabidopsis thaliana GN=MYB8 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 212 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: response to salt stress [IMP]
    response to osmotic stress [IMP]
    regulation of transcription, DNA-dependent [ISS]
    cold acclimation [IMP]
    response to salicylic acid stimulus [IEP]
    Molecular Function: DNA binding [ISS]
    transcription regulator activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSPCCEKA HMNKGAWTKE EDQRLIDYIR NHGEGSWRSL PKSVGLLRCG KSCRLRWINY  60
   61 LRPDLKRGNF TDGEEQIIVK LHSLFGNKWS LIAGKLPGRT DNEIKNYWNT HIKRKLLNRG 120
  121 IDPKTHGSII EPKTTSFHPR NEDLKSTFPG SVKLKMETSC ENCASTSGTT TDEDLRLSVD 180
  181 CDYRYDHLDK ELNLDLTLGY SPTRFVGVGS CY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..120] PSI-BLAST 28.69897 CHICKEN B-MYB DNA BINDING DOMAIN, REPEAT 2 AND REPEAT3, NMR, 32 STRUCTURES
    2 View Details [121..212] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle