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Protein Overview: TA12B_ARATH

General Information:
Name(s) found: TA12B_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|39545906|gb|AAR28016.1| TAF12b [Arabidopsis thaliana] [NCBI NR]
  • gi|30685323|ref|NP_849680.1| EER4 (ENHANCED ETHYLENE RESPONSE 4); DNA binding / transcription initiation factor [Arabidopsis thaliana] [NCBI NR]
  • gi|20259253|gb|AAM14362.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18394483|ref|NP_564023.1| EER4 (ENHANCED ETHYLENE RESPONSE 4); DNA binding / transcription initiation factor [Arabidopsis thaliana] [NCBI NR]
  • gi|15810159|gb|AAL07223.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • Transcription initiation factor TFIID subunit 12b OS=Arabidopsis thaliana GN=TAF12B PE=1 SV=1 [Swiss-Prot]
  • TAF12b [Arabidopsis thaliana]gi|20259253|gb|AAM14362.1| unknown protein [Arabidopsis thaliana]gi|15810159|gb|AAL07223.1| unknown protein [Arabidopsis thaliana]gi|30685323|ref|NP_849680.1| transcription initiation factor IID (TFIID) subunit A family pro [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transcription initiation factor IID (TFIID) subunit A family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: EER4, TAF12B | EER4/TAF12B (TBP-ASSOCIATED FACTOR 12B); transcription initiation factor | chr1:5984400-5987656 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • TAF12b [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transcription initiation factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: EER4, TAF12B | Transcription initiation factor TFIID subunit A | chr1:5984407-5987663 REVERSE LENGTH=683 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein At1g17440 OS=Arabidopsis thaliana GN=EER4 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 683 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    transcription factor TFIID complex [ISS]
    Biological Process: regulation of ethylene mediated signaling pathway [IMP]
    transcription initiation [ISS]
    jasmonic acid mediated signaling pathway [IMP]
    Molecular Function: transcription initiation factor activity [IEA][ISS]
    DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV  60
   61 TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH PSSSLDQQTQ TQQLVQQTQQ 120
  121 LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ 180
  181 IQQQQQQQHQ GQYGNVLRQQ AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH 240
  241 LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT 300
  301 SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA 360
  361 GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ QQQQQQLSSP QLHQSSMSLN 420
  421 QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ 480
  481 QQPSPRMLSH AGQKSVSLTG SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV 540
  541 DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG 600
  601 FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP 660
  661 SQSSEQLVSQ TSGPHILQHM TRY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..164] FFAS03 1.24 No description for 2j63A was found.
    2 View Details [165..361] PSI-BLAST 4.0 Sec24
    3 View Details [362..524] FFAS03 1.16 Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
    4 View Details [525..602] PSI-BLAST 34.221849 TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain
    5 View Details [603..683] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  0.581886805340955 bayes_pls_golite062009
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle